RNA id: XR_006252233.1


Basic Information

Item Value
RNA id XR_006252233.1
length 2130
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122355666
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13709055 ~ 13712541 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTATCATGAACTTTGTTCTCATAActttcaactttatttattttatgttctttttttaaattacattaaaaacttaACATTGTAGATTATACTAGTAATGTTTTAAGAACCAGGGAAAATTCTGCTAATATATTTTGACTGTTTATTATCCTAATTCTGCCTTTGTTCTCGAAATATTACTACTTTAAGCCATAAAGTTgaggttttatttgatttgttattttatcCATCCAGAGTATGAAATGTACGTTCTGGTGCTTGTTCTCTTTTTTAGCCCCCATCCAAAAGCTTCCAAAAGCCACCCACTTATGAAACTACATTCAAGGCTGTCTTGGTGACCTGAGTGATTGTTGTTTTATTCCTGTGTGCTTTTAGGTGAGTGTTTTATGCTCAATCGCCCTCTCTAACACAAACCCAGAATTTACTGGCACCTCTCACAGGCATGACTGACAGAACACAGCCAATACTCACAGTTGGCAGCAACTCTCCAAAAGAACCATGCTGCTCTGGCTTACGTTTTATTTATAGCAGATACCTGGTAATGAATACCTAGCCGCCGCCAATCGCTTGTGTTATCTGCTGAATGTGTGCAACGTCGTCTTGTAATTTTCCaaacaaagttttgtttttgtattcatttgctTTTCTGTTGAGAGGTCCGGTCTCCACGTGGCCAATAGAGAGCAAGGAAGCCCCGGCAGGCAGGAAGCTACACCTCCCGTCGTACCGAATGAGTTGCAGCATTCAGTCTTCAGCCTATGCAACGGTAAACCGAAGAGATGATCAAATTTGAGTTGAGGACGCGCGTGCAGTTTAAAGAGAACGTTTTTACACAGGTACATGCAAATCCTGATGAGATCGGTCCGGGCACGACGTGACTTTAAAAGTGCTCCTGTAGCAGCAAAAGGAGGATGCTGGGAAGAGGAGGTCAGAGGTTCAGCCGTCAAAGAGGTTCACGAGTGATGGATGGCAGTCTGAGCTGCGCACAGCACATCTACTGTAGCCTTAACCGCCGAAAAGGCCTGCacacaacacaaataaataaataaacacgcaCATCAAAGgaattttcaaaaagaaaaacaaagccaGAGCACGTTCGCAAactcacacttacacacacacacacacacacacacacacgtacacacccgtgccagaaataaaaaaagaaagcaagcagTCAAAGGCCTGAAAATGCACACATAGTTAACTGTCTGATAACGGCAGGCTTGAGgaaaatgagacaaaacaaaacaatggcGAGAAGCATATGTGTAATTGTGCATTCGGTTTGAAAATATTGGGATAAGATTTTGCTGAAACTGATTGATGCCATTCTCTCTTGGAAGATAGTGGGCCTTGTTTCCTCGTACACAATATTGCTTGTGTCGTGACCTGGGATGCAAAGAACGAAACGGCTGAAATGCATTTCACCATGTAAAAGTACTTTCTTGAAATGAGCAAACTGTAATTTAATCCAAATTATCCATATGACTCCAgcccatcaattaatgtctagAGAAGCGAAGAGCTGCGTGTTTGCAAGAATCGAATCCATCGTTGAGGCTTTTTAACTTCaaccattgcttctggccaaaatataaGTCCTTAATCCATACtaacgcttcctccagtgaaaagtcccctgttttctttcacatcaaaatccagaCATATTTGAAATGAACTTATGGCTCTTGATCTGTTCATATTTCACTCCTGATTTAGATGAGAAGACTTTTTTTCACTGAAGACCCtgtattttagccagaagcgaTGGTTTTAAGTTCTAAATTCCTTGATGGGGttattacacacatacagcttTTTTCTTTACAAGATGTTAAGtggagtcgtgtggattatTTATGGATtactattatgttttttatcaCCTGCAGATGATCCATTAGTGAGCTGTGATGTAATGCTCATTTACTCCGAATCTGTTTCGAAACGGAAAACAAACGCATCTCCATCTTAGTTGACCCGAAGTTGAGTACGTTTCCAGCTAATTttcattgatttcatttaattaactaTGCTTTCTGCTTCAGagtaaaatagaaacaaaaagtaaagtttaagataaaaaaatataaagattttttatttctcatcttAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130329 lncRNA downstream 169672 13538691 ~ 13539383 (-) False entpd1
TU130281 lncRNA downstream 247810 13460145 ~ 13461245 (-) True G88035
TU130280 lncRNA downstream 249190 13458456 ~ 13459865 (-) True G88034
TU130263 lncRNA downstream 274930 13433894 ~ 13434125 (-) True G88019
TU130253 lncRNA downstream 276860 13429406 ~ 13432195 (-) False LOC122355808
TU130423 lncRNA upstream 112059 13824600 ~ 13894358 (-) True G88146
TU130511 lncRNA upstream 281119 13993660 ~ 13994186 (-) True G88205
TU130512 lncRNA upstream 281831 13994372 ~ 13995952 (-) True G88206
TU130548 lncRNA upstream 419378 14131919 ~ 14133138 (-) True G88233
TU130730 lncRNA upstream 685819 14398360 ~ 14398928 (-) True G88355
XM_043253779.1 mRNA downstream 17715 13614147 ~ 13691340 (-) False tcf7l2
XM_043253788.1 mRNA downstream 17716 13611734 ~ 13691339 (-) False tcf7l2
XM_043253778.1 mRNA downstream 17716 13611734 ~ 13691339 (-) False tcf7l2
XM_043253786.1 mRNA downstream 17717 13611734 ~ 13691338 (-) False tcf7l2
XM_043253785.1 mRNA downstream 17717 13611734 ~ 13691338 (-) False tcf7l2
XM_043253479.1 mRNA upstream 7130 13719671 ~ 13839456 (-) False vti1a
XM_043253481.1 mRNA upstream 7130 13719671 ~ 13839456 (-) False vti1a
XM_043253478.1 mRNA upstream 7130 13719671 ~ 13839456 (-) False vti1a
XM_043253480.1 mRNA upstream 7130 13719671 ~ 13839456 (-) True vti1a
XM_043253473.1 mRNA upstream 133632 13846173 ~ 13854773 (-) False acsl5
XR_006252221.1 other downstream 17716 13611734 ~ 13691339 (-) False tcf7l2
XR_006252219.1 other downstream 17717 13611734 ~ 13691338 (-) False tcf7l2
XR_006252218.1 other downstream 17717 13611736 ~ 13691338 (-) False tcf7l2
XR_006252220.1 other downstream 17717 13614147 ~ 13691338 (-) False tcf7l2
TU130001 other downstream 956377 12751904 ~ 12752678 (-) True G87845
XR_006252179.1 other upstream 260341 13972882 ~ 13976511 (-) False srsf2a
XR_006252180.1 other upstream 260341 13972882 ~ 13976511 (-) False srsf2a
XR_006252178.1 other upstream 260341 13972882 ~ 13976511 (-) False srsf2a
XR_006252177.1 other upstream 260341 13972882 ~ 13976511 (-) False srsf2a
XR_006252176.1 other upstream 260341 13972882 ~ 13976511 (-) False srsf2a

Expression Profile