RNA id: TU130514


Basic Information

Item Value
RNA id TU130514
length 1048
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G88207
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 14028426 ~ 14090868 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttTTTCTGATTTCATCGTTGAGCTTTATTTAAAACCTGATATGATAGCATGTTAGAAATTTCTGTTTGCTTGCAGtgtaaatctgaaatattagcgttgtttttaaatgtggcAAATGAAGCCACATTTTAATCTTGCACGTCTTTGGTGTGTTTCCCATATAAACGTATTGTTCAATAACAATATTGGTCACAGATCAAGTGTATCACAATAATTAAGAATTCTAACAATGTAgtatcaaacaaaacaaattatatacacaatacaaagaGCTGCGTGTCTCAACCTTGACTCTCTAAGCCCCTGAAAAGtgtctgaataaaagtattaaaggAAATTAAGCTGGTATTACTTATCAGTAAGGTCCCTTGTGAAAGTGATCACAAAACAGGAAAGCTGTTTGTTTCTCCTGCTGGCTTGGTCCAAGTTCAGTAGCAAAAAGAGTCCTCCACAGGAAAATGCAGTACCATCAATACATTTACAAGACAAAAGAActtgtacatatatttaaacaatgcaGAGCATTATAAAGGCTTGGCAACACTTAGAAACAGATGCCCTCTTGTACATCTGTCCAGCAATCACAATTGGATATGGCCATGTGTTTTAAACAAACCCAACATGAGGAACAAGTTTGGTCAAACACTTAATATATCGAAGACCTCACAGGCCACAGTTCTCTAACTTGTCCTTATTTATTCTAAGACTGTGGTGGTTTTGAACACTAGCTCCTTGTTTAAATTGCATTGTGTACTGCATTCATCTATGAAATCTTGCAGCTCGTCCGTGCGCAGTTCTGGGATGGGCTCAACGGTGGGTAGATGATTTTGGATTTTTTGGTTCCGTTCCTCTTTTTAGCGCTGCTGGCTATGACCGAGTAGGAACGACCGTGCATCATCCTGGCATTCAGGCCGTTGGCCATGGAGAAGGACTTCAGATGGCTCTTTAAGGCAACAGGAAGGGGAAGTTTGTCCACAAGGTGCACTGGAGTGCAGGAAACGATGGAACGACAGCAAAGGTCCTGCAGACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130377 lncRNA upstream 311294 13715584 ~ 13717132 (+) True G88111
TU130372 lncRNA upstream 318187 13710004 ~ 13710239 (+) True G88106
TU130338 lncRNA upstream 448135 13580078 ~ 13580291 (+) True G88079
TU130321 lncRNA upstream 488403 13539789 ~ 13540023 (+) True G88063
TU130320 lncRNA upstream 490338 13536166 ~ 13538088 (+) True G88062
TU130541 lncRNA downstream 33444 14124312 ~ 14131677 (+) False stxbp4
TU130573 lncRNA downstream 51845 14142713 ~ 14218976 (+) True G88238
TU130627 lncRNA downstream 142644 14233512 ~ 14243310 (+) True G88270
TU130624 lncRNA downstream 146545 14237413 ~ 14238303 (+) True G88269
XR_006252244.1 lncRNA downstream 154484 14245352 ~ 14267029 (+) True LOC122355796
XM_043254480.1 mRNA upstream 28099 13997306 ~ 14000327 (+) True lrrc59
XM_043254478.1 mRNA upstream 31363 13993668 ~ 13997063 (+) True LOC122355878
XM_043254479.1 mRNA upstream 31363 13993670 ~ 13997063 (+) False LOC122355878
XM_043253194.1 mRNA upstream 35382 13978171 ~ 13993044 (+) False rnf157
XM_043253192.1 mRNA upstream 35382 13978193 ~ 13993044 (+) True rnf157
XM_043253091.1 mRNA downstream 15088 14105956 ~ 14131785 (+) False stxbp4
XM_043253092.1 mRNA downstream 15089 14105957 ~ 14131785 (+) True stxbp4
XM_043253093.1 mRNA downstream 15089 14105957 ~ 14131785 (+) False stxbp4
XM_043253090.1 mRNA downstream 16253 14107121 ~ 14131785 (+) False stxbp4
XM_043254329.1 mRNA downstream 45797 14136665 ~ 14142072 (+) True hlfb
XR_006252175.1 other upstream 37672 13978180 ~ 13990754 (+) False rnf157
XR_006252174.1 other upstream 37709 13978180 ~ 13990717 (+) False rnf157
XR_006252173.1 other upstream 39933 13978182 ~ 13988493 (+) False rnf157
XR_006252211.1 other upstream 123799 13894361 ~ 13904627 (+) True LOC122355339
TU130395 other upstream 164724 13863091 ~ 13863702 (+) False gucy2g
TU130947 other downstream 1219695 15310563 ~ 15312004 (+) False si:dkey-21c1.4
XR_006252253.1 other downstream 1255689 15346557 ~ 15378101 (+) False qki2
TU130987 other downstream 1360626 15451494 ~ 15763376 (+) False LOC122355837
TU130982 other downstream 1673029 15763897 ~ 15766340 (+) False LOC122355837
XR_006252168.1 other downstream 1786372 15877240 ~ 15923990 (+) False baiap2b

Expression Profile