RNA id: XM_043253019.1


Basic Information

Item Value
RNA id XM_043253019.1
length 3136
RNA type mRNA
GC content 0.47
exon number 19
gene id dlgap5
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7807662 ~ 7815339 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttttcaaaacctgcCCGCCATCTTGCATGCCGTACGCGATAGGCAGGTAAACGttacagaatataaatattgtgaatCATTTCGTGTCTTAATATAACAGTTTTGGACTCGCGTAACTCACCATAACATAAAGGATGGACTCTCGCTTTGCTCACCTGTACAAGCGGGACAGCAGTGTGTCTATGATCCGGCTGAAGATGTCCAGACGCCGGTCTCAGTCTCAAAAAGAGAACCGAGAGAAGATCCAGAACTTGCGTAGACACCTGGACAATCTGCCAGAGATCGAGCTCTCAATGGATGCATCCATTCTCATGGCCACCCAAGACAAAGCATCAAAAACAAAGGCAGCTAATGATGTAAATGCTGCTGTTGAGGAGAGAAAGAAGATGCTCGCCCGttacaaagaaaacaagatgTTACAGAAGGAGAAGGTAAAgcgagaaaaagagaagaaaggtGTATTTAAGGTCGGCCTGTATAAGCCACAGCCACTCGGGTATCTGCCTTCAAACACTGCTCCACAAAGCAGGGGCAAGATCACAGAAACTAACCAGACCACACGAGTGACCCGCTCAATGATGCATAGCCAAAAGCCAGCAACAGACAGACATGCTGTTCCAAAGAAAGTGGAAAATGTGTTGACCACCAGAACTTCAGCCAAGACTAACTCAAAACCTGTGACTACCACCAAAACCAGAACAGCTACGGTTGAACCATCTGTGAGAGGTCCAACCACACGATCGGCTGCTAAAACAACAGTAGCTGTGGTTAAACCACTTACTGATTCAACGACTGCAAAAACGAGATCAACTGTTAAATGTCCTGTAGCGCCCTCTTCAGGCAAAGAGAAAGATGGACAAAGCAACGCAAAggcagttattaaaaataagactgctGAGAAAAAGGACACTGCAATTGGTTCTTTGAAACCCGAGGAAGAGGAACCCAAAGCTGCTGCCCCTTCATTTGCCCCTCAGGGATTTGTGTTCCAACCTCCTGTGGGTCTGAGCTCATTCGAGCCTGCACCTCTCTCTCCACGTTCAGCTAGTGCCTTCCTCTCACCGAGcTTTCTTTCTGATGGCAATGTTGAACCTACATTCCCCTCTCCTCCAAAACCTGTTCTCCCTACTCCATCTGTCTCCTCCTCTCCACCACCTCCGTCAACCCCTCCAAATCATCCTGCCAACCCCCCCTCAGTGTCCTCAACCCCTCCAGCCCCATCCTCCCCTCAGCTGTCTATATCTACAGCACCATCTCCTCCCTTGGCCCCCTTGGAGCCTCAACATGATGTCGCCTATTTCAGGGCAGTGATGGTAAGTGAGACTGAGCGTTTAACTGGACTTTCTGAGCTGTGGGAGTCACGATTTGATGATACTTCTATCCCAGAGGAGACACGAGACCAGATGCGTACTGTTGTGGGCCAGGCCAGACTGTTGATGAAGGAGCGCTTTGGCCAGTTCAGCGGGCTAGTGGATGACTGCGATTTTTGCCGTGGAGAGAAAATCACAACCTGCACTGACTTACAGGGTTTCTGGGACATGGTGTACTTTCAGgtGGAAGATGTTAACAAGAAATTTAATGCCTTGAAAGAGGCAGAAGCAAGGGAGTGGAAAGAGGAAGTCAGGCCTGTTGTCAGAAAAAGAGTGGCCAAAAAGCCTCCTGTCGTGGGAGGAAAGGCTGGAACAGGTGCCAGTGCCGCAGCTAAGAGTCGACTTGCTGCTGTAAAAGCTGCAATGAGAGCCAAGCAGGCTGAACAGAAAGCCACTGAGACTTCAGACAACATCCAGGATGACTCGAGCTCTGAACCTGCAGCCCCTGCCATCACACTGCCTGCACAGACCGTGGTGTTTAATGGAGGGTTCTTCCAGGTCGAAAGTCCAGTCAAGCCATCAGGTGCTGTTAGAAGATCGTGTCGAACCAGTGCAGTTTCTTCACCCTGTATTTCTAAGTTTAGCACTCCAGGCAGGCAGTGCAGATCCACTGCAGTTTCTCACGCTTCCCCTCTACCTAGCTCGTCTGCCACACCACTTCCAACCCATCAAACAGATGCATTACCTATTGCCACTCCTATACGTTCTGCTGAGGCCCTCCCACAGTCACCCAGAGCTCTTCAGATTGTTCCTGACCACAACCAAAATGTTTCACCAGACCGCTCCAACAGCCGTATTCATTTTGACTTAAGCTCTACCAGTATCCAACACACCCAACCAGATATCAgtaacggaactgaaaacagtCCAGTAGCCCAAACACATGACTCACCCAGTCAGGATGAGCCAGCTGTTGATTCTTCAGAACCTCAACATAAAGAATGCATTCCAGAGTCTATGCTCCCTTCACAGGAGGAACCACCACAGAACATTTCTTGTGAAGTCTCTGAAGAGAGTTTGCATGTCCAGCCTGGAGCAGATGCTGGTGTAGAAACTCCATCCCAGGGCTCATCTCATAGCTCTTCAGAACCAGACGTGGAACCCAGTGTCTGTGGACCTGCTTCACCGACCCTGATGCTGTCCACACCAACTAAAGATCTCACAGTTTCTACAGCTCTCTGTAATGAGGTCATCATTCCAGTCATTAATGGATCTCCAATCAGCATGGATGTTGAAATGACTGGAAATCAAGATGCTGAGGGTGCTACCAGTTTGGACATTGAGCGTTACCTGCAGCCGACAATGAGATACAGCATGTCTCCTGCACAGAGTCCTGCAGCAGAGAGGTTCTCTCTTGGGGCAGTAGATGCTGAGATGGAGAGTCCGGTGACTCAGGCGGATGAGCGCCCATATGATGTCTTGGCAACAGATGTCGGAGAATCTGTTGCTGTTCTCTCCGGAACGGAAGGAGAAAGTGAGGCAGTCGGTGTGTGAACGTGACCTGATCACATTCACACCTCccacatacaaataaaagcacatCCACTCACTCTTTGGATGTggataattttattttttatatactttttttttttttttttttttttttggtttgtgcaTAAATTAGATGTCTTTTGGTTTGTTGAATTAGGCTCCTTTTGATACTAAtttgttttctactttttgtacTCCATAATTAGCATATTTAGATACCACAATATTTCTATGCAGTTCTGAcctcagaaaatatttttaaagctttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127784 lncRNA downstream 99468 7707860 ~ 7708194 (-) True G86357
TU127783 lncRNA downstream 102179 7705221 ~ 7705483 (-) True G86356
TU127781 lncRNA downstream 108648 7698665 ~ 7699014 (-) True G86354
TU127756 lncRNA downstream 171518 7634638 ~ 7636144 (-) True G86333
TU127757 lncRNA downstream 173106 7631396 ~ 7634556 (-) True G86334
TU127809 lncRNA upstream 31142 7846481 ~ 7846832 (-) True G86375
TU127862 lncRNA upstream 72627 7887966 ~ 7888246 (-) True G86412
TU127863 lncRNA upstream 74964 7890303 ~ 7891221 (-) True G86413
TU127922 lncRNA upstream 239429 8054768 ~ 8055031 (-) True G86458
TU128016 lncRNA upstream 295854 8111193 ~ 8112713 (-) True G86516
XM_043254282.1 mRNA downstream 11896 7789587 ~ 7795766 (-) True eif2ak1
XM_043254283.1 mRNA downstream 12339 7789587 ~ 7795323 (-) False eif2ak1
XM_043254280.1 mRNA downstream 18266 7778296 ~ 7789396 (-) False usp42
XM_043254278.1 mRNA downstream 18266 7778296 ~ 7789396 (-) True usp42
XM_043253460.1 mRNA downstream 47145 7754857 ~ 7760517 (-) False minpp1b
XM_043254481.1 mRNA upstream 676 7816015 ~ 7824303 (-) True ccz1
XM_043254150.1 mRNA upstream 11263 7826602 ~ 7828985 (-) True pvalb9
XM_043254202.1 mRNA upstream 16057 7831396 ~ 7833152 (-) True pvalb3
XM_043254203.1 mRNA upstream 20092 7835431 ~ 7837139 (-) True LOC122355674
XM_043254201.1 mRNA upstream 22753 7838092 ~ 7839471 (-) False LOC122355671
TU127575 other downstream 418752 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 703444 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1136415 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1734230 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1753309 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 532823 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 702896 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 703641 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 795213 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 867713 8683052 ~ 8687548 (-) False plbd1b

Expression Profile