RNA id: XM_043253088.1


Basic Information

Item Value
RNA id XM_043253088.1
length 3548
RNA type mRNA
GC content 0.47
exon number 11
gene id tex2l
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8089481 ~ 8101898 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGATTGAGGAGCTGCTGCTCGCAAAATCACATCTGGATGGAGCCTGTGAAGGGGAGGAGTTAGTTTCTATGGGGATACACAGCTTCACGGTAATATAACAGCGATGCACTGCATAAGTGAAGTAATAATTCCAAACTCCGGAGGACCTTCACGCTGTGCAGTCCAGAATTACCGAGCGACTTCTGCACAGCCCTGCGGCTATAAGAGCACATCGCTCTTCAACGGTTGCTTGTTTCATAAAGTGTGATGTCAAGCTCATGCAAGACTCACGCGAGACGGTTTAAGAAAGTGTCATTTGTCTCCTCTCTGGGAATGAATCACGGGACTGCGACTCGCTGTTACTGACGGGTGATATTTTTTTGGAGATCAGGCGATGGTGCAGAAAttggAGATAAATCATGGCAGGGATAACAGGAAATGAAGGAACTCACAAATTGGCCGGTGGGACCCAGAGGCCAGGTTTACAGCCAAAGCAGGACAAGGACAAGAGAGGCATAGTAATCCAACTGACGGACACTGAGGGGGAATGGGACAATCTTGATGACACTGACCTCATATTCACATTGGACTGTGAAGGCAAAAAGTCACTCAGCTCTCTCAGAAACCAAAGACCATGTTCAGTTGACATTCAGACAGAGGGGGAATGGGGTCTCAGCTCACCTGCATTCAATGttcctctctctccatcttctCCGGGCTCCTTGGGAAACTCTTTTCCCCCGGGGTCTGGCTTTCTCTCGCCCACTCACCGACCCCTGGCCAGCTTAGTGAAGTCCCTATCTACAGAATTGGAACTAAAAGAGTCTTCTCTAAAGCCCAAACCACTCCTCAGCCTCGTGAAGTCGATTTCCACCGAGCTTTCTCGCAGTGAGCCGGAGGTGTCTCAATCCAGGTCTGATTCCAAGCTCAATTTGCACTTGTTGTCGCAATTCACTCAGTCCAAAAGCCGCAACGGTGACTCCCGCACCGCCCCTCCATCTCCAGTCAACTTGTCCCCCACCGAGTCCAAAGCCAGCTTCTTCAAAATGGAGTTGGAGGACACCCGACGCAAGCTCTCGGAAGCCATGCAGGAACCTTTGAGCATGTTCAGTAAGATCATGCGTGAAGATAGTGTTGGAAGTCCCAAGCACCAAAGGAGCACAGGATCAGTGGACTCTCCAGGCTACAAAGGCTTTGGAATTGGGAAAACGACCACCGACTTGACCGTATCTGAATCCCCGAAAAGTGGTAGGAAAGCAGAAAGTGAGATTCTACCAGAGTGTAACTGGCCTGTGAGACATCGCAGACGGTGTGTGCAGAAATCCTTGCTTTCCCATGAGCACCATAGCAGACAGGAAGACACTGGGCCTGTGATGGAGTCCAGCACTCACAGCAGTCCTTCCCAGAGAATAGATATGAATAGAACTGAGCAAGATGGTTTGGCAGAGGATGTGAAAGAACAATGCTCCTCTCCAGTGCCAGGAGTGGGTCTTGCCTATGTAGCATTTCTGTCATACTGCTACTTTATCTTTCCTTTGTCAGCTTATTGGTCTGGCCTGTTCCTTGGTTTAGTGTTTGGATTAATTTTGGGGCTTGTGCTGATCCGATGGGGCTCAATGAAACACTTGCCCACCAGTCAACAACATAAACTACATGGGACgtcatttaataatattctcTTTGAAGCCCTACAAAGCAACGTACCGTCTCTCAAGGGTTGGATGAATGAGATGTACACATATGATCCAGAGACCTACCATCCATCCCTTATGCAGACTGTTTATGTCACATTGGACGGACCCTGTTTGCGGCTTAACTACCCACGTAACAACATTCCCCGCTGGGCTACTTTTGACGAGCCCTGTTACGAAAAGCATTTCACCCACTCACGGATATTTCGGCTCACTGGCAGCAAGGTATTTCTTCTGCCACTGGCTTTGGCACACAAGAGAGTGTGGAACAGGAAGTATCCAATCTGCATAAGTTTGGCTGAAGGAGAAAAAGCTTTGGAGGAAGACGAGATGGCAGAATTTCAAGGGGAGGCTCAGAAAGTAGAGAAACAACCTGACCCTACGGCGAATGTTTCACATCCTGTCACACTATACCTCTTTGGACGAACGGGACGAGAGAAAGAGGAGTGGTTTCATCGACTGTTTTCTGCATCCATTCACAATGAAGAGGACCATTCTGAATATACATCTGGTGATAAGTCTGTATTGCATGAGGAGAACCCTTTGGGTCTGTCATGGGGTGGTGAAAGCTCAATGAAGGACAGCAGTGAAGATGTGTTCCATAATGATCTGGTTGGCAGAGTAAAAGAGAACATTTTACCAGATTATACTTCTTACATGACCAGTCTCATCTTCTCAGCACATGCCAGTCCTCTGCAAAGCCCCTGCCAAAGCAGCACCCAGGGCAGTCCTACTGAAAAAGAACAGACCTTTTGTTGCCATGAGGATGAAACAAAACCTGACTGGTTGAATGCACTAATTGGCCGGATCTTTTGGGACTTCCTCCATGAGAAATACTGGGCTGATAAAGTCCAACAGAAGATTCAGCGAAAACTGAGCAAAATCCGGTTGCCTTACTTCATGGATGAATTGACCCTCACCGAACTGGCCATGGGCTCCAGCATGCCCCAGATAACAGGCACATCTCTACCACAGGTCAACAGCAGAGGCCTTTGGTTGCATTTGGAGGTGGAGTACACTGGAGCGCTACAGATGACCCTAGAGACTAAAATCAACCTCTCCAAACTTGGGAAGGAGGGAGTCCCCGAGGCAGAGACAGAGTTGGAGACCATTAATCTGTTGTCCAGGCTCTCTGTGCTGGCTGACAGCGATGAGGAATCCTCAAGTGCAGGGTCCTCCGATGAGGACGAAGTTTCATCTGCTGACACTCAAGGAAGTCTGACCGAAAAGGCCGTACCTGGTGTTGAGGGGTACAGTTTCTGTGGACCCCCGAAGCTTGATCTGAGAGTCCGACCCAAACTGGGAGAGCGAGAAGTGACTTTCTGTCATGTaactgaatggattgaaaaaaaGCTGCAGGATGAGTTTCAGAAGGTTTTCGTTTTGCCCAACATGGATGACATTTACCTGCCGCTAATGCACTCTGGGATGGACAACCCGCCAGCTTTCCCACAATACCCTACAAAGCTCTCCCAGCATTCCTCTCTGGCCTCCACTGACAGATGCGATCCGGAACATTCTGCAGAACTACAGTAGTGCCTCCTTGTGGAACAGACGTGACATTGCAGCAGTACCAGGACTCGCTCATTTAACATTCAACAAACTTCTAGCAGTGTAAGCTTCATCCATTCAGcttcatttcaacatttaaacagCACAGAGCAAAATGTCAGTAGCTCTCACAAATATTCTCTCTAAATGTATACAATCGTTACATATCAGAAATCCAAGTCGGCTATTCTCATCATACCAGTGGCTTAATAAaccattttgtttatttattgtgtttatgtcCTGAGGACAACTAATTATTTGCTGAACTTATAAACAAATACGTATTAgtattaatcaataaatatcaagtgataatgaattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127922 lncRNA downstream 34450 8054768 ~ 8055031 (-) True G86458
TU127863 lncRNA downstream 198260 7890303 ~ 7891221 (-) True G86413
TU127862 lncRNA downstream 201235 7887966 ~ 7888246 (-) True G86412
TU127809 lncRNA downstream 242649 7846481 ~ 7846832 (-) True G86375
TU127784 lncRNA downstream 381287 7707860 ~ 7708194 (-) True G86357
TU128016 lncRNA upstream 9295 8111193 ~ 8112713 (-) True G86516
TU128010 lncRNA upstream 46849 8148747 ~ 8154173 (-) True G86513
TU127996 lncRNA upstream 85743 8187641 ~ 8188917 (-) False G86505
TU127998 lncRNA upstream 85743 8187641 ~ 8190285 (-) True G86505
TU128056 lncRNA upstream 97020 8198918 ~ 8199124 (-) True G86553
XM_043253456.1 mRNA downstream 17843 8069332 ~ 8071638 (-) True atpaf2
XM_043253452.1 mRNA downstream 20421 8056927 ~ 8069060 (-) False tom1l2
XM_043253454.1 mRNA downstream 20422 8056927 ~ 8069059 (-) False tom1l2
XM_043253451.1 mRNA downstream 20422 8056927 ~ 8069059 (-) True tom1l2
XM_043253455.1 mRNA downstream 20423 8056927 ~ 8069058 (-) False tom1l2
XM_043253006.1 mRNA upstream 13492 8115390 ~ 8119810 (-) True bricd5
XM_043253024.1 mRNA upstream 18436 8120334 ~ 8122090 (-) True LOC122355067
XM_043253112.1 mRNA upstream 24185 8126083 ~ 8129019 (-) True zdhhc4
XM_043253703.1 mRNA upstream 53335 8155233 ~ 8179107 (-) False arhgap17a
XM_043253702.1 mRNA upstream 53335 8155233 ~ 8179107 (-) True arhgap17a
TU127575 other downstream 700571 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 985263 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1418234 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 2016049 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 2035128 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 246264 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 416337 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 417082 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 508654 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 581154 8683052 ~ 8687548 (-) False plbd1b

Expression Profile