RNA id: XM_043253133.1


Basic Information

Item Value
RNA id XM_043253133.1
length 5972
RNA type mRNA
GC content 0.50
exon number 45
gene id psme4b
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10585082 ~ 10609150 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgcgtgtgagtCTGAgcgtgtgtatgtgagtgtgtgtctgtccgtGTGACTCGTAATATGTGTCAAGAGAGTGAGGGGAGACTTATCTATGTAGGTGACTGGAGCTGATGTGTTTAACACCAGAGGTCAGAAAGACAGAGATTTGTCGAAGTAACAAGTTTTGATCTGAAAGGCGCTCCACAACACCGGCACGTATGCGAAAGTAGCGgattttgtgaataaaacaaagatttgtCAAGGGAACTTCTGTCAAGAGGGGAAGGAAATAAACCGGACACGTCAGAAGAGGAtatttctttttggaaatcGTAATATGAAAAAGGAGCAGGCCGAGATACTAGGTTTTGTCCCTCAGAAAGAGATCGTCTACAACAAACTTCTCCCGTACGCAGACAAACTAGACCGCGAATCCAATGACATTTTGGCCCAGATTAAAGGGAACTTGGGTCGAGCTGTCCAGCTCCGTGAGTTATGGCCCGGAGTTTTACTTTGGACTCGGAAACTCTCCACGTACCTTCGGTTGTACGGGAGAAAGTTCAGCAAGGAGGACCATGTTCTCTTCATCAAACTTCTGTACGAGCTGGTCACCATCCCCAAGCTGGACATCAGTATGATGCAAAGCTTTGCACGGCTCCTCATCAACTTACTGAAgAAGAAAGAACTGCTGTCCCGGGATGACTTGGAATTGCCTTGGAGGCCTTTGTACGATCTCTATGAGAGTATCCTGTACTCAAAAACTGAGCATCTCGGTCTTAACTGGTTCCCAAACTCAGTGGAGAACGTGTTGAAGACACTAGTCAAGAGCTGCAGACTTTATTTCCCCGAATCAGCCACACAGGAGATGCTTGATGAGTGGCGGCCATTACTGTGTCCATTTGATGTCACTATGCAGAAGGCCATTGGCTACTTTGAGCTCTTTTTGCCCACCATCATGCCCCCAGAGCAGCACGACAAAAGCTTCAAGTTATGGTTTGATGAACTGATGGATCTCTGGGTTTCAGTGCAAAACCTGCCTGCATGGGAGGGTAATTTAGTGAATCTTTTTGCACGTCTGGCTAATGACAACATTGGCTATGTGAACTGGGAGCCGTACATTCCCAAGATCTTCACCAGGATCCTACGTAGCTTCAATCTTCCTGTAGGCACCAGCCAAATGGTCGTTCCCAGATACTTAACCAACTCCTATGATATCGGTCATGTGGTCCTCTGGATTTCCTCCATGCTTggcGGCCCTCAGAACCAGGCCCAGAAACAGCTTAATGGGCTCTTTAGTAGTATTGCATCTTTCTACCACCCTTCAAACAATGGGCGCTGGCTGATGAAGCTGATGAAGCTTCTACAGCGTCTGCCTGCCAGTGTGGTTCGGCGGCTACATCGGGAGCGTTATAAGAAACCCTGCTGGATCACCCCTGTTCCTGCCAGTTACAGACTCACGGACCAGGATGTTACGGACTTTGTGGAAAGCATGAAGCAGCCGGTGCTGATGGCCATGTTCAGCAAGACGGGTAGCATGGATGCGGCTCAGGCCTTGCAGAACCTGGCCCTGATGAGACCAGAGCTGGTCATCCCACCTGTACTGGAGAAGACATATCCTGCTATGGAGACTCTGACGGAGCCCCACCAGCTTACTGCCACTCTCAGCTGCATGATTGGCATGGCCCGCAGTCTTCTCAGCGGTGGCCGACATTATCCCGAAGGTCCTGCGCACGTCCTGCCCCTGCTAATGAGAGCACTGCCTGGTGTTGATCCTAATGACTTCAGCAAATGCATGatcaCGTTCCAGTTCATTGCTACTTTTACTACTCTAGTGCCTTTGGTGGACTGCTCATCGGCCCTCCATGAGAAGAATGATTTGACAGAGATGGAGAGGGAGCTGTGCTCGGCGTCTGCGGAGTTTGAAGACTTTGTTCTGCAGTTTATGGACAGGTGTTTCGCGTTGATTGACAGTAGCACTCTGGAGCAGACGCGTGAGGAGACGGAGACAGAGAAAATGACTCATTTAGAGAGTCTGGTGGAGCTGGGCCTTTCATCCACCTTCAGCACCATTCTGACACAGTGCTCCATGGAGATATTCAagGTTGCTCTTGAGAAAGTCTTTAACTTTGCTACCACCAACATCTTCGAGACTCGTGTCGCAGGCAGGATGGTGGCAGacatgtgcagagcagctgcTAAGTGTCACCCGGCTGAGTCTCTCAGGCTGTTTGTACCACACTGCTGTAACGCCATTACTCATCTAACTGCCAATGAAGACGTTTCCAATGAAGAAGAACTGGACAAAGAACTGCTTTGGAACCTTCAGCTGCTATCCGAGGTGACTCGTGTGGATGGAGAAAAGCTCCTCCCATACCGCACACAGCTGGTGCAGACTCTCCAGCTGACCTTGCGTTTGCGCTGTAAGCAGGGCTACACTCTGGCCTGCAACCTGCTGCACCACATCCTGCGTTCCACAGCGCTCACCTACCCCACAGACTACTGCAGTGTGCCCGGTGGCTTCAACAAACCCCTGCAGGAGTACTTACCCATTAAGGATTGGGGTCGTCCGGGCGACCTTTGGAACCTGGAGATCCAGTGGCACGTGCCCAGCACAGAGGAGACAGCATTTGTTTTCTATGTTCTGGATCTTCTGCTGCATCCAGAGCTCCAGCGTCTGCAGAAATACGCACAGGGAGAACAGGAAATGAGCAGAGATGATGTTCTTCAGAGTCTGTGTATAGTCCAGCACTGTCTGCTGGGGGCTGGCAGCATGCTTCCCCCTCTTGATGGACCCACAGTTACCGGCCTTGTACCCAGCTTGGTTAGTTTGGAAGAAACTAAACTGTACATTGGTGTCGACTATGATGAGTCCAGAGAGAACTACCGTGAGGCCATCTGTAAAGTGATGAGACAGTTGCTTCATTACATTCTAGAACACTCAGAGGATGACACCAAATCACTTTTCGCCATTATCAAGATCATCAGTGACTTGATGCACTTCAGAGGTTCCCACAAACATGAGTTTGACTCTCGCTGGAAGAGTTTCACTTTGGTGAAGAAGTCCATGGAGAACAGGCTTCATGGGAAGAAACAGCACATCAGAGCTCTTCTGATTGACAGAGTTCTTCTTCAGCATGAGATGCGAAAGTTGTTGGTCGAGGGCTGTGAATATAAAACTGTTCATCAGGACCTGTTGAGGGACCTTTTGCGTCTTTCCACCAGCACCTACAGCCAGgtCCGCAGCAAGGCCCAAAATGTGTTGTTCACAGCCTTGGGGACCTATAACTTCTGCTGCCGAGACATTACTCCACGTGTCCTGGAGCTACTGGAACCAACACGGACTGACGTCACCCAGCAACAGTTCAAGGGGGCGCTCTACTGCTTGCTTGGGAACCACTGTGGAGTGTGCCTTGCTAACCTACATGACTGGGATTGTATCGCTCAGACATGGCCAGCCATCGTGCGCTCAGGCCTCAGTTCAGCTATGTCTCTAGAGAAGCCCTCTATTGTCAGACTCTTTGATGACCTCGCAGACAAGGTCCACCGGCAGTACGAGACCATCGGCATCGATTTTACAGTACCCGAGAGTGCAGTTTTGCTGGGCCAGTGCATCACCAATTCAAAGCAGCCCAATCCACACATCGGCTCTCCGACAGAACAGGAGCTGGAGCAGGGGCTGACGCTTCAACAAGACAAAAACCAGGAGGCAGTGCAGAAATATGAAAATCTTGTGAAAGACCTGTTGGAATGTCTAGATGACAGGGACCTGCCTTGGAAGTTTGAGCACATTGCTATTGGCTTCCTGTCTTTACTGCTAAGAGATGACTATCCCCTCCCAGCCCCAGCCGTGCTCTTCTTTGTACAGAGCCTCAACCATGATGCACTTGTTGTTCGCAAGATGGCGATCGCTGCAATGGCAGGCATACTGAAACAGCTGAAGAGACAGCGCAAGAAAATACCTGTTAGTCCCTGTGATATAAGTGGGGTAACTGAGCCGGAGGGGCTGGTGGCAGGAGACAGACCGGGGAATGACTGGCTGCAGTACCACGGTGACAGCCTGCCGAGCACCCAGCAGGACTGGGATAGTTTCTGCTTTATAGAGAAGACACACTGGGGCTACTACTGCTGGCCAAAGGAGTTGATGGTATATGCCCCAGCAGCAGAGCAGCCCAAAGATCTTTCCGCTGAGAACATGAATGAGAGAGAGCGCATCATCTGTGACCATTTCACAGACCCTATGTTCATCAAACAGCTTATTGAGTTCCTGTCTCTTGAGGACCGAAAGGGCAAAGACAAGTTCAATCCTCGTCGCTTCTGTCTTTTCAAGGGACTCTTCCGGAACTACAGTGATGCCTTCCTGCCTGTTCTAAAGCCTCATATGGAGCGGCTGGCAAATGACTCTCACGAGAGCACCCAGCGCTGTGTGGCTGAGATCATTGCAGGACTCGTTAGAGGCAGCAAACACTGGAGCTTCAGCAAGGTGGAGGCATTATGGAAATTCCTGATTCCTTTGATGCGCACAGCACTGTCCAATATTACAGTGGAGACCTATGCTGACTGGGGTACCTGTGTGGCGACTGCCTGTGAGAGCCGAGATCCACGAAAGCTCCACTGGCTTCTTGAGATGCTGATGGAGTGTCCTCTCAGTGGGGAAGGTGGATCATTTGTGGATGCCTGCCACCTGTATGTGCTGCAAGGTGGTCTGGCACAACAGGAGTGGAGAGTCCCAGAGCTGCTACACAGATTGCTGAGTTACCTGGAGCCCAAACTGACTCAGGTTTATAAGAATGTGAGAGAGCGCATCGGCAGTGTGCTGACGTACATTTTCATGATTGACGTTACCCTGCCATACACTCAGCCTACTAAGTCACCACACATCGCTGAGTTTACAGAAAGGATCTTGTCTCAGCTGAAGCCCCTGATTGAGGGAGACGAGGAGATCCAGAACCATGTGGTGGAGGAGAACGGAGTTGGGGAGCAGGACGAGAGGACCCAGGCCATCAAACTCCTCAAAACTGTTTTGAAGTGGCTGATGGCCAGTGCGGGGCGCTCCTTCTCTACTCCAGTACCTCAGCAACTACAGCTGCTGCCCCTGCTCTTtaagATCGCTCCAGTAGAAAATGATGACAGCTATGATGAGCTGAAGAGGGATGCAAAAACTTGCCTGTCTCTTATGTCTCAGGGTCTCCTCTATCCCGAGCAGATCCCTCTGGTACTGAAAGTGTTACATGAGATTGCTGGCAGCAGCTCTTGGCACGCACGATTCTCAGTGCTAACATACCTTCAGATAATGGTGTTCTATAACCTGTTCACCATACTGAGCAATGAACAGGCCGTTCAGGACGTGAGAGCACTGGTCATCAGACTACTGGAGGATGAGCAGCTGGAGGTGAGAGAGATGGCTGCCACCACTCTCAGCGGCTTCCTGCAGTGTAACTTCTTGGCAATGGATGCCTCCATGCAGACTCACTTTGAGGCTCTGTGCAAAACCAGATTACccaaaaagaggaagagaggcTCTGTGGTGGACACCATTCCTTCAGTCGATCTGGTACGCCGTCACGCCGGAGTGCTGGGACTCAGTGCTTGCATCTTATCCAGCCCATATGATGTCCCAACCTGGATGCCTCAGCTCCTCATGGACCTCAGCGCGCACCTCAACGACACGCAGCCTATTGAGATGACCGTGAAAAAGACTCTGTCTAATTTCCGCCGTACTCATCACGACAACTGGCTGGAGCACAAGCAGCAGTTCACAGACGACCAGCTCGTGGTGCTCACAGACCTTCTTGTTTCACCCTGCTACTATGCATAGACGGGTATGTTACAAAGACAtgtttaaaggaacagctcatccaaaaaagaaactttaagtTATCATTGCATtacttgcagtgaatgggtgccgtcagaaaaaaagtctttttgtgATGATACAACCTGTTTAGTCTGGTAACGCTCCTTAATTGCATGATTTTGACCtttatctctttct

Function

GO:

id name namespace
GO:0010952 positive regulation of peptidase activity biological_process
GO:0035093 spermatogenesis, exchange of chromosomal proteins biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006281 DNA repair biological_process
GO:1990111 spermatoproteasome complex cellular_component
GO:0005829 cytosol cellular_component
GO:0016607 nuclear speck cellular_component
GO:0016504 peptidase activator activity molecular_function
GO:0070577 lysine-acetylated histone binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128885 lncRNA upstream 85385 10497463 ~ 10499698 (+) False LOC122355633
TU128887 lncRNA upstream 88806 10495475 ~ 10496277 (+) False LOC122355192
XR_006252232.1 lncRNA upstream 486142 10078658 ~ 10098941 (+) False LOC122355662
TU128850 lncRNA upstream 487103 10078468 ~ 10097980 (+) True LOC122355662
TU128849 lncRNA upstream 624125 9960647 ~ 9960958 (+) True G87095
TU129023 lncRNA downstream 280268 10889418 ~ 10889625 (+) True G87181
XR_006252208.1 lncRNA downstream 307036 10916186 ~ 10919109 (+) True LOC122355308
TU129005 lncRNA downstream 309629 10918779 ~ 10939829 (+) False LOC122355308
XR_006252189.1 lncRNA downstream 345508 10954658 ~ 10955795 (+) True LOC122355200
TU129060 lncRNA downstream 372128 10981278 ~ 10987710 (+) True G87207
XM_043253447.1 mRNA upstream 2538 10542232 ~ 10582545 (+) False svila
XM_043253135.1 mRNA downstream 5043 10614193 ~ 10620486 (+) True asb3
XM_043253730.1 mRNA downstream 98748 10707898 ~ 10864445 (+) False nrxn1a
XM_043253719.1 mRNA downstream 98749 10707899 ~ 10864445 (+) False nrxn1a
XM_043253713.1 mRNA downstream 98749 10707899 ~ 10864445 (+) True nrxn1a
XM_043253717.1 mRNA downstream 98749 10707899 ~ 10864445 (+) False nrxn1a
XR_006252209.1 other upstream 3328 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other upstream 5087 10542229 ~ 10579996 (+) False svila
TU128882 other upstream 93911 10487620 ~ 10491172 (+) False LOC122355192
TU128881 other upstream 97742 10481615 ~ 10487341 (+) False LOC122355192
TU128819 other upstream 711188 9871664 ~ 9873895 (+) False LOC122355252
unassigned_transcript_1922 other downstream 475127 11084277 ~ 11084370 (+) True trnai-uau_3
TU129235 other downstream 1085694 11694844 ~ 11701655 (+) True G87315
XR_006252241.1 other downstream 1327692 11936842 ~ 11944855 (+) False nbr1a
TU129954 other downstream 2123614 12732764 ~ 12737649 (+) True G87817
TU129966 other downstream 2151224 12760374 ~ 12762273 (+) False gall

Expression Profile