RNA id: TCONS_00009744


Basic Information

Item Value
RNA id TCONS_00009744
length 2182
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_004981
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 46869271 ~ 46881002 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAATGACGTCATCCCAAACATGGCGGCCTACTTGAGCCGGTTGCACCACATTTCCCTGCAGGTTTCAAACGTGGATAAAGTCGCTCACGAGCTCGTGTCGCGGTTCCAGTTTAACGTGTTCGCGGCGCGACGGACAGACCGGGCGAAGCAGCTCGCGCTCCGCAGAGGATCCGCGGTGTTCGTGGTGAACGAGAGACCGAGTCCGAGTGACTGCGGCGCTGTCAGAGATCACCGGGACGCGGGTTGTGTGTTCGGGACTCATGAGCACTACCCGGTGGACACCGTTAGTAACGTGTGCTTCGAGGTGACCGATGTACCGAGCGCGAGCCGGGCGCTCCGGGATCAGGATGGGTGTGAGTTCCTCCAGCCGCCCGCGGAGCTTCAGGATGATTGTGGCCGGGTCACCTTCTCCATCGTGCGCTCCCCGGTGGGTAACGTGTGCCACACACTCATCGACAGCTCCCGGTACCAGGGCCCCTTCCTGCCCGGTTTCCGTGAGGTGAGCTCAGGCTGTCAGGGTGCAGACCGCTCCCGCTGTCCCATCACTCACTTCGACCACATCACTTACGCCTGTCCGCGGAGCAGTACTGTACACATCACCAACTGGTATCGGAGGAACTTTGGCTTCCAGAGGTTCTTCATTGACAGAAATGAGGATGTGGACGAGGGATACGTGTTGAACCATGATGGGATCGGCCTGCGTTTGACAGCTATGGAATACTGGAAATGCAGTGAGTCTGGAATAAAACTGCCCTTTAAGGATGAAAAGGAGCCGGACTGCAAGTTTGTGATCGCAGAGTCTCTCCCTGAGCAAGgCAGGAATCAGGTGGACACGTTTCTGGATGAGCACCGAGGAGCAGGAATCCAGCACATCGGCCTGTACACCGAGGACATCGTGAAAACTGCTCAAACTCTGAGTCAGGCTGGAGTTCAGTTCTTCTCTCCTCCTCCGGCGTACTACACTGAGGTGGGAAAGCAGCAAGAGATGTTGGATGCAGGTTATGATCCTCAGACACTGAGTCGATATGGGATTCTGCTGGACACTGACATCCAGAcggacacagacagacagaccacaGACGGCCAACGGCACCTCCTGCAGGTCTTCACCAAGCCGGTGTTTGCAGAGGACACGTTTTTCCTGGAGCTGATCGAGCGCAGAGGAGCAACAGGCTTCGGCGAGGGGAACATCCGAGCGCTCTGGAGATCCGTTCAGGCCTATATGGAGAACGGAGAACATCAGGAGAGGCAGAGCAACAACCAGCAGAGCAAACAGTGCTGACTGAGCATCTGCaccacacgcacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacacacacacacacacacttatagagAATACACTGTAGGAAACAACTGTTAATGAACAGCGTCCGTATTTAGTGATTCaccagtgttttctgtttatttacagttgagaattgcattatgggatgttgatctctgctctgtccacttttgatgtcggaaattcagctctacagtttaacaaagtgactattATTGACagtttattagttttatataatataatttatcagAAATATAGAGTAATAAGTCTAAAAAATAACAGAATATGTGCTGCATTTTgttacaaggtgtttgtagtgtaatatacaacaccaacacagatgatatagcactttaaactattaaaaatgtaaacaaaagtcactttttccaacttttcaaggtttAAAATTATTGGagaaaagatcaagatcccataatgctcttcaaaagcagaaatacagAATCCCAAAATACAGACATCTACTAATGTATGGATTACTTTCTTACAGACACTAGGataagatctacctgagctttaGATTTACTGACTGCAGCACCTTTGGGAACATTTGTGTGAATAGAAAGTGATTTTGTCCTCTGTTCAGGACTTTTAGCATATTTGACTGTAACAGTCTTCAGTTCAGGCACTTCTAAAATCATCGGCTTTATATtgaatgtgatttatttattcaataaccATGATAATAATGATATTCCCTAACTGTGATGGACTGTAATTTCATGTAAACCCATTTGATGTGACGTTTACAGTGAAATACATGCaggttttgttaaaataaatggaaacctCTAAACAACA

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity molecular_function
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-50 Predicted to enable 4-hydroxyphenylpyruvate dioxygenase activity and metal ion binding activity. Predicted to act upstream of or within aromatic amino acid family metabolic process. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human HPDL (4-hydroxyphenylpyruvate dioxygenase like).

Ensembl:

ensembl_id ENSDART00000166560

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009729 lncRNA upstream 175828 46683212 ~ 46693443 (+) True XLOC_004976
TCONS_00010774 lncRNA upstream 326082 46542671 ~ 46543189 (+) True XLOC_004970
TCONS_00011035 lncRNA upstream 637400 46188296 ~ 46231871 (+) True XLOC_004963
TCONS_00011034 lncRNA upstream 766851 46078647 ~ 46102420 (+) True XLOC_004962
TCONS_00010772 lncRNA upstream 815075 46046285 ~ 46054196 (+) True XLOC_004961
TCONS_00010775 lncRNA downstream 154719 47035721 ~ 47036420 (+) True XLOC_004984
TCONS_00011036 lncRNA downstream 699020 47580022 ~ 47580566 (+) True XLOC_004991
TCONS_00010776 lncRNA downstream 725869 47606871 ~ 47610330 (+) False XLOC_004992
TCONS_00010777 lncRNA downstream 727337 47608339 ~ 47610330 (+) True XLOC_004992
TCONS_00011038 lncRNA downstream 1447864 48328866 ~ 48330894 (+) False XLOC_005002
TCONS_00009742 mRNA upstream 637 46841918 ~ 46868634 (+) False XLOC_004980
TCONS_00009743 mRNA upstream 1265 46855036 ~ 46868006 (+) True XLOC_004980
TCONS_00009741 mRNA upstream 33331 46791907 ~ 46835940 (+) True XLOC_004979
TCONS_00009739 mRNA upstream 102971 46742805 ~ 46766300 (+) False XLOC_004978
TCONS_00009740 mRNA upstream 105447 46745239 ~ 46763824 (+) True XLOC_004978
TCONS_00009745 mRNA downstream 2783 46883785 ~ 46937956 (+) False XLOC_004982
TCONS_00009748 mRNA downstream 79577 46960579 ~ 46985891 (+) False XLOC_004983
TCONS_00009749 mRNA downstream 86787 46967789 ~ 47042081 (+) True XLOC_004983
TCONS_00009750 mRNA downstream 163705 47044707 ~ 47072007 (+) False XLOC_004985
TCONS_00009751 mRNA downstream 169987 47050989 ~ 47072007 (+) True XLOC_004985
TCONS_00009724 other upstream 265716 46603441 ~ 46603555 (+) True XLOC_004973
TCONS_00009703 other upstream 2242264 44626890 ~ 44627007 (+) True XLOC_004951
TCONS_00009686 other upstream 5408637 41460518 ~ 41460634 (+) True XLOC_004935
TCONS_00009675 other upstream 6457589 40411566 ~ 40411682 (+) True XLOC_004927
TCONS_00009671 other upstream 7365593 39503564 ~ 39503678 (+) True XLOC_004924
TCONS_00009746 other downstream 2842 46883844 ~ 46937955 (+) False XLOC_004982
TCONS_00009747 other downstream 34369 46915371 ~ 46937946 (+) True XLOC_004982
TCONS_00009795 other downstream 1935158 48816160 ~ 48825502 (+) False XLOC_005016

Expression Profile

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