RNA id: XM_043253149.1


Basic Information

Item Value
RNA id XM_043253149.1
length 2992
RNA type mRNA
GC content 0.47
exon number 17
gene id slc4a1b
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2605131 ~ 2616287 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGTGTGCGTAGAGGTGTGTCTGATATCTGCAGGTGTACACAGACTTTATAAAGGTCTGCACACTTTTGTGAGGGGCTGTGACGGAGAATATTGCTTGAAAATTTGGGTCATTTATTGAAGATATAAGGCGTATGTAAATATGAATGAGTCGGGGAAGAACCCAAACCAGCAGAGCTATTGGCAGGAGATGGGCAGATGGGCGGGCTACGAGGAGACCTATGATGTCGAAGCGGGACGCTGGGGCCCGTCCCACATCTCCTACCTCACCTTCAAGAGCCTGGTGCAGATACGCAGGACAATGAACACGGgTTTAATAATGCTGGACCGAGAGGAGAAGACGCTTTCCGGTGTTATTGAGAAGGTTGTGGATGCCCTGGTTAGCAAAAAGGACATTCAACCAGGGGACAGAGATAAGGTTCTTCAAGCATTAATGCACAAACAGAGCCAGTCTGTGGAGACCCAGCCTCTGACTTCAGGCATGGAAATGGAAAAATTCTCTGTCACAGAGAAAAGCGACACAACTGGTACCGCAGAGGCCTCGATGGTGCTTGTAGGTGCTCTGGAGTTCCTCGAGAGGCCCACGATAGCATTCGTGCGTCTACGGGATGCTGTGGTGCTGGAGTCTGCGCTGGAAACTCCTGTACCTGTGCGATTCATCTTCATCCTGATTGGCCCAACCACAACTGACATGGACTATCATGAGTGTGGCCGAGCAATGGCAGCACTACTTGCTGACAAAGTATTTAACCAGGCAGCTTTCCAGGCTCAGAGTGACCGGGAGCTGACTGATGCTTTGGGAGACTTCATGGACTGCTGCATTGTGATTCCACCCACTGAGATTCAGGATGAGTCCATGCTAACGTCACTCATCCCCTTCCAGAAGAAACTACTGCAAGAGAGACTCCGTCCATCGGACCCCAAACTGCGCCTGGATGTCAAACCTCGCAAGCCTTCAAAATCCTCAGGACCACCTCCAGAAGATCCACTAGCACGTACTGGTGTTCCATTCGGTGGCATGATTAGAGACATGAAGAGACGCTATCAGTACTATGTCAGTGATATCACTGACGCTCTCAACGCTCAAGTTGTTGCTGCCATCATCTTCATCTACTTTGCTGCTCTCTCACCGGCCATCACCTTCGGAGGTCTCCTAGCTGATAAGGTGGACAACATGATGGGTGTTTCAGAGCTGATGATCTCCACTTCAGTGCTGGGCATTATCTTCTGCCTGATCGCTGCCCAACCTGTACTAGTTATCGGCTTTTCTGGGCCACTCCTGGTGTTTGAAGaggctttttttaatTTCTGTAAGTCTCAGGAGATTGAGTACATCGTAGGCCGAGTGTGGGTTGGCGCTTGGCTGGTGGTCATTGTTGTGGTCATTGTTGCTTTTGAAGGCAGCTTCCTGGTCCGCTTCATTTCCCGCTTCACTCAAGAGATCTTCTCCATCCTCATCTCCCTCATCTTTATCTATGAGACTTTTGCCAAACTTGGCAGGGTTTTCAAGGAACACCCTCTAATCCTGAATTATGAGCATTTGAACACTACAGCTGAGGACCCTTGGCACTCAGTCGTCAGCTATCAGAGATTACTGGACAATGCTACAGGCAATATGTCTGTCGTGAGGTCCATCACGCACCAGCCTTACCCCAACACAGCTCTTCTCTCCATGTGCCTCATGTTTGGCTGTTTCTCTATCGCATACTACCTACGCATGTTCAAGAACGGCAAATTCCTGCCAGGCAAGATTCGACGATTGCTTGGTGACTTTGGCGTTCCTATTGCAATTTTCCTTATGGTGGCTATCGATATCAATATTGAGGATACATACACTCAGAAACTGGTGGTGCCTAAGGGTCTCCAGGTGTCCAACCCTAAGATGCGGGGATGGTTAATCAACCCTATGGGTGAACACAAGCCCTTCCCCATATGGATGATGTTTGCCTCTGTTGTCCCAGCTATGTTGGtcttcatcctcatcttccTAGAGTCTCAGATTACCACGCTAATTGTGAGTAAACCAGAGAGAAAAATGGTCAAGGGTTCTGGCTTCCACATGGACCTTCTGATCCTGGTAAGCATGGGAGGTCTGAGTGCCATATTTGGCATTCCTTGGTTGAGTGCCGCAACTGTACGATCCGTATCTCACGCCAATGCCCTGACAGTCATGAGCAAGGGCCCAAAACCTGAGATCGAGAAGGTTCTGGAACAGAGAGTCAGTGGAGTAGTGGTGGCTTTGCTTGTTGgtctgtccaTTCTCATGGAGCCCATTCTAAAAATGATTCCGATTACAGCACTGTTTGGAATCTTCCTCTACATGGGAATCACATCCCTGAGTGGAATTCAGCTTTGGGACCGAATGCTGCTCCTCCTTATTCCCAAAAAGTATCACCCAAATGAACCTTATGCTACTAAGGTCAGCACCAACAGAATGCATGTTTTCACTGCTATCCAGATGGTGTGTCTGGCAGCCTTGTGGATGGTGAAATCAAGCCCTGTATCCCTGGCTCTACCGTTCATCCTGATACTCACCATCCCTCTGCGCATGTTTATGACTGGACGACTTTTCACTGAGCAAGAGATGAAATATCTTGACGGTGATGATGCAAAGGCGACATTTGAAGAGGAGCCAGGAGTGGATGTGTACTCTGAAACACAGATGccattataaatcatttttcacaATCAACGTTTTGGAGTGCAAAATTCTGACAAGATGATACCTAACTTCAGCCCCCCTCTAATGCAACTTTTGGTGTGTTTGGGGAAGGGGTTCTATGTTAATTGCTCTTTTAATGGTCCGTTACGGTTCTTCCAAGATGACATATCATGACATGCAAAATTTGGATGTACATTTAAGTGCCTTTTGTAACTTTTGCACTCGCATTCATTAGTTACTGTGTTATGAAAATGCACACAGAAGCAGCACAAAGATATGATATTGTTCTTGCatgataaagaaatatattttaataaattatttgactTGA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015698 inorganic anion transport biological_process
GO:0015701 bicarbonate transport biological_process
GO:0042891 obsolete antibiotic transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function
GO:0042895 obsolete antibiotic transmembrane transporter activity molecular_function
GO:0015106 bicarbonate transmembrane transporter activity molecular_function

KEGG:

id description
K24194 BOR; boron transporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126176 lncRNA downstream 28225 2573311 ~ 2576906 (-) True G85165
TU126193 lncRNA downstream 97170 2506178 ~ 2507961 (-) True G85177
TU126188 lncRNA downstream 118927 2485194 ~ 2486204 (-) True G85174
TU126187 lncRNA downstream 121204 2482247 ~ 2483927 (-) True G85173
TU126127 lncRNA downstream 293660 2311243 ~ 2311471 (-) True G85119
TU126235 lncRNA upstream 62435 2678722 ~ 2679291 (-) True G85214
TU126237 lncRNA upstream 63757 2680044 ~ 2680317 (-) True G85216
TU126283 lncRNA upstream 175633 2791920 ~ 2792523 (-) True G85235
TU126303 lncRNA upstream 252853 2869140 ~ 2869689 (-) True G85250
TU126331 lncRNA upstream 302898 2919185 ~ 2947389 (-) True G85257
XM_043254406.1 mRNA downstream 1439 2597896 ~ 2603692 (-) False atxn7l3b
XM_043254407.1 mRNA downstream 1441 2597896 ~ 2603690 (-) False atxn7l3b
XM_043254408.1 mRNA downstream 1441 2597896 ~ 2603690 (-) True atxn7l3b
XM_043254411.1 mRNA downstream 1443 2597896 ~ 2603688 (-) False atxn7l3b
XM_043254410.1 mRNA downstream 1443 2597896 ~ 2603688 (-) False atxn7l3b
XM_043253233.1 mRNA upstream 88001 2704288 ~ 2708929 (-) True LOC122355185
XM_043254049.1 mRNA upstream 233689 2849976 ~ 2860000 (-) True LOC122355585
XM_043254050.1 mRNA upstream 253834 2870121 ~ 2877710 (-) True LOC122355586
XM_043254449.1 mRNA upstream 388142 3004429 ~ 3083353 (-) True LOC122355866
XM_043254446.1 mRNA upstream 389309 3005596 ~ 3063570 (-) False LOC122355866
unassigned_transcript_1807 other downstream 111340 2493710 ~ 2493791 (-) True trnal-uag_3
TU125823 other downstream 657719 1870773 ~ 1947412 (-) False ank3b
TU125629 other downstream 1708101 891132 ~ 897030 (-) False dlx4b
XR_006252247.1 other downstream 2244819 340273 ~ 360312 (-) False prr12a
TU126277 other upstream 151621 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 474498 3090785 ~ 3092413 (-) False LOC122355711
TU126480 other upstream 642244 3258531 ~ 3299688 (-) False G85366
TU126481 other upstream 682261 3298548 ~ 3299606 (-) False G85366
TU126483 other upstream 682261 3298548 ~ 3299606 (-) True G85366

Expression Profile