RNA id: XM_043253164.1


Basic Information

Item Value
RNA id XM_043253164.1
length 791
RNA type mRNA
GC content 0.47
exon number 3
gene id hbae5
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8194223 ~ 8195216 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCAGTGTTAACTGGCAGGAGTTCAATCTGACACGCAATTAGTCTGTATCTTGGGTGCGCCCACTCAACTACAAACGCTTAAAAAGAGGACCGATGTTTAGGTGGGCAAGTCATTCGACCCTGGCACGACTGCTCGTTTCGGGCATCGCTTCAGAATGAGTCTCTCCGCTAAAGACAAAGCAATCGTGAAGGCCCTCTGGGCGAAGATCTCCCCAAAGGCTGAGGATATCGGCAACGAGGCGTTGTCCAGAATGCTCTATGTCTACCCTCAGACCAAAACCTACTTCTCTCACTGGAGCGACCTGGCCCCCGGCTCTGCTCCGGTGAGGAAGCACGGAAAGAAGGTCGTCTCTGGAATCGGTTTGGCTGTTGAGAAAATCGACGACCTTTTCGCCGGCCTGCTCACTCTTAGCGAGCTGCATGCCTTTCAGCTGAGGGTCGATCCTGCTAACTTCAAGATCCTTTCCCACAACATCCTCTTGGTGTGCGCCATGCTCTTCCCTAACGACTTCACACCTGAAGCCCACCTGGCCATGGACAAGTTCCTTGCAAGACTGGCCCTGGCTTTGTCTGACAAATATCGTTAACCAGTTTGATGTTTGTCAAGCAGTTTGAATGTTGTTTCGTCGATTTGGCCAACAACATGTCAATAAAAAACTGATCTGGAGACATCGTGCGTTGTGTTCCCTGTCCGTAACCAAATCTAAATCtagcctaaataaataaataaatttagccTACATGCAAAATcgaaaaaatgattttgaataaataatttatagaaaatttc

Function

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K13826 HBZ; hemoglobin subunit zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127998 lncRNA downstream 3938 8187641 ~ 8190285 (-) True G86505
TU127996 lncRNA downstream 5306 8187641 ~ 8188917 (-) False G86505
TU128010 lncRNA downstream 40050 8148747 ~ 8154173 (-) True G86513
TU128016 lncRNA downstream 81510 8111193 ~ 8112713 (-) True G86516
TU127922 lncRNA downstream 139192 8054768 ~ 8055031 (-) True G86458
TU128056 lncRNA upstream 3702 8198918 ~ 8199124 (-) True G86553
TU128087 lncRNA upstream 94864 8290080 ~ 8290410 (-) True G86576
TU128132 lncRNA upstream 139191 8334407 ~ 8338700 (-) False cpped1
TU128137 lncRNA upstream 144240 8339456 ~ 8339815 (-) True G86606
TU128139 lncRNA upstream 149120 8344336 ~ 8344609 (-) True G86608
XM_043253703.1 mRNA downstream 15116 8155233 ~ 8179107 (-) False arhgap17a
XM_043253702.1 mRNA downstream 15116 8155233 ~ 8179107 (-) True arhgap17a
XM_043253112.1 mRNA downstream 65204 8126083 ~ 8129019 (-) True zdhhc4
XM_043253024.1 mRNA downstream 72133 8120334 ~ 8122090 (-) True LOC122355067
XM_043253006.1 mRNA downstream 74413 8115390 ~ 8119810 (-) True bricd5
XM_043254435.1 mRNA upstream 8358 8203574 ~ 8205720 (-) True zgc:163057
XM_043253226.1 mRNA upstream 67894 8263110 ~ 8266628 (-) True foxj1b
XM_043253227.1 mRNA upstream 67894 8263110 ~ 8266368 (-) False foxj1b
XM_043253549.1 mRNA upstream 72558 8267774 ~ 8278165 (-) True mgrn1a
XM_043253548.1 mRNA upstream 72558 8267774 ~ 8278164 (-) False mgrn1a
TU127575 other downstream 805313 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 1090005 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1522976 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 2120791 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 2139870 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 152946 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 323019 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 323764 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 415336 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 487836 8683052 ~ 8687548 (-) False plbd1b

Expression Profile