RNA id: XM_043253195.1


Basic Information

Item Value
RNA id XM_043253195.1
length 2911
RNA type mRNA
GC content 0.47
exon number 19
gene id rnf157
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13978171 ~ 13993044 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCACTGACTGCTCTAAAATATGAGATACCACTTTTCAGGAGATTACAGAATAGGATATATGCTTATTCAACATCAGTTTTATTTCCTATTTGGGCTTATCTAGGtgatatgttttatgttttccatTAACTTTTATCCAAACTATTGTTAAATGCTAGTGTTTCCTGTCATAATTGCAATGTTCTGATTTCCAAAAACAGTATAATAGCTACTGATGTTTACAATCTGTACAATTCTGTATTTAACATTTCAGGCTACGTAAAGTTTAGCCCTGTctgttttgcatatttgaaaatgattaacagTTGAAAACATTAACATGCATTCAATTAGTTATGTTAATTAGTCGAAACAGTTACACTactgcattttacattttgcagcaTTTCTCCTGATgttttttatacatgcataggctatatatattaataagaaGCAACTTCCGGGCCTTTAAGCCCCGCCCATTTAGAGACAACGCACGATGTTCACGGCGGCTCTACCCTTTTATTCTGTTTCTACATCACCGATACGCATCTGCATCCCATCGCTCAAGCGCTAGGAGAACAGAGGATACagggatgatgatgataaacaTACCGAGAAACTGTGTCATATAGAGAGCACCTCACTCCGCTTTGCAACTTAGCCAAGGATGCCGACCACGGAGGCAGAGACAGCCTTATAACAGGGCTACAGTTTGCGGGACGCAAAAAGCAGCTTGTGTCTGCAGACAAAACAACGAGGGACTCTGTGCGGAGCTTACAGGGCATTAAGAGCACCAACTAATCCTGTGcatggccaaaaatataaaagcgaAGAGCAAAAAACGGCCTTTTGCGTGAAGAAGGAGATGTTCGGACTAAAGAAGACGCAGCGTCAGTAGGATCGCAATCGTTCGgcgttattttaatttttagctgTTGGAAATGGGAGCTTTGACAAGCCGTCAGAATGCAGGAGTGGAGGAGGTCGATATACCATCCAATTCTGTTTACAGATACCCACCCAAATCCGGGAGTTATTTTGCTAGCCATTTCATTATGGGAGGAGAGAAGTTTGATTCAACTCATCCTGAAGGCTACCTCTTTGGTGAAAATACTGACCTCAACTTCCTAGGCAACAGACCAGTAGTGTTCCCGTACAACGCTCCCCCTCCACACGAGCCAGTCAAGACCCTCCGCAGTCTCATCAACATCCGTAAAGACACTCTGCGACTTGTCCGATGTAGTGAAGACATGAAGCTTCCTGGACAGGAAGCTGGGAAAAGCCACAGCTGCTATAATATTGAGTTTACCTTTGATGCCGACACACAAGTTGCCATCACTATATACTACCAAGCCATTGAAGAGTTTCACAATGGTGTGCCAATATACTTGCCGCAGGACAGCTCTCTGCAGTCAGAGACGGTGCATTTTAAACGAGGCGTCTGCCAACAGTTCTGTCTGCCCTCTCATTATGTCAACTTATCAGAGTGGGCAGATGAGGAGCTTTTGTTTGACATGGATAAAGACATCTACCCCATGGTTGTACAAGCAGTAGTGGATGAGGGAGACGAACACTTGGGACACTCCCATGTTCTTCTAGCAACTTTTGAAAAGCATATGGATGGAAGTTACTGTGTAAAACctctgaaacagaaacaagtGGTGGATGGTGTTAGTTACCTTCTGCAGGAGATTTACGGTATAGAGAACAAATACAACAGTCAAGAATCAAAGGTGGCAGAAGATGAGATTAGTGACAACAGCGCTGAATGTGTGGTGTGTTTGTCGGACGTGCGGGACACACTTATCCTGCCCTGCAGACACCTGTGCCTGTGCAACGCCTGCGCAGACACGCTGCGCTACCAGGCCAACTGTTGCCCCATCTGTCGACTGCCATTTCGTGCCCTCCTTCAAATCCGAGCGATGAGGAAAAAACTGAGCCCACTCACGCCTACTGGATTCAACCCTGTCATCACCTCACAGACATCAGATTCAGAGGAGCACTCGGCATCAGAGCACATCCCACCTGGCTATGAAGCTGTGTCCCTGTTGGAGGCTTTGAATGGGCCCCTGAACCCGTCGCCATCTGCTCCTCCACTTCAGGGCCTCACCAGGGGCCATGTTTCTGGATCTGTGCCCACATATGGCAGTGATAGCCACCACACGCCCGCGCGCTCCCTCTCTCCGCTAGAACACTCTGTCAACTCCAGCCAGAATGTGAAACACAAGAAGAGCGGCTCTAAATCCCTCTCCCAGAATTCTTCAGTGCTGCCCgaggaggaggatgagaagTCATGCAGTGAGTCTGAAGCGCAAACGTGCAGGAGAAAACTGCACGTAGAACAGCAAGAGTCTGGAGTGACTCCTGAAAGCGACAACATCACCCTGTCATCCTCAGGGGCCATAGATCAGTCGTCCTGCAACGGGACCCCTCTGTCCTCCACAATCACCTCCCCAGAGGATCCAGTAAGCAGCAGCCTGGCCCAGTCTGTGATGTCAATGGCGTCCTCTCATAGCCAGCACTCTCAGATTAGCACCGACACTCTCTCTTCAATGTCCGGATCCTACATGGCTGGTGCAGAGGGAGAGGAGGCCTCCGAGACCCCAGCAGAGAGCCGAGCGCCTTCCCAACATGAGGGTGAGGAAATTCCCAACGAGCCAAAAGGGCATAACTTTGTGGCCGCCATTCTTGAAGAACAGGATTCGGAGGGAAATGATGTGACTGAGGAAGATTGCGCATCTCCCACCAAAGAACATGATGAGGACTCGTGTCCTGTTCAAATTGAGGAATAGGTCTGTTATACCTTGACGTCTATCGTCATGGACGGGATCCTTTGACTCACCATGCGTCCACCAGCAACATCAACCTGGAGGAGCAAGGGGTCACCAATGAGGCTGCAAATCCCAAGAGCAAATCTCATCGTGG

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130377 lncRNA upstream 261041 13715584 ~ 13717132 (+) True G88111
TU130372 lncRNA upstream 267934 13710004 ~ 13710239 (+) True G88106
TU130338 lncRNA upstream 397882 13580078 ~ 13580291 (+) True G88079
TU130321 lncRNA upstream 438150 13539789 ~ 13540023 (+) True G88063
TU130320 lncRNA upstream 440085 13536166 ~ 13538088 (+) True G88062
TU130514 lncRNA downstream 37632 14028426 ~ 14090868 (+) True G88207
TU130541 lncRNA downstream 133518 14124312 ~ 14131677 (+) False stxbp4
TU130573 lncRNA downstream 151919 14142713 ~ 14218976 (+) True G88238
TU130627 lncRNA downstream 242718 14233512 ~ 14243310 (+) True G88270
TU130624 lncRNA downstream 246619 14237413 ~ 14238303 (+) True G88269
XM_043253196.1 mRNA upstream 5523 13968509 ~ 13972650 (+) True habp2
XM_043254227.1 mRNA upstream 10516 13925760 ~ 13967657 (+) False LOC122355687
XM_043254478.1 mRNA downstream 2874 13993668 ~ 13997063 (+) True LOC122355878
XM_043254479.1 mRNA downstream 2876 13993670 ~ 13997063 (+) False LOC122355878
XM_043254480.1 mRNA downstream 6512 13997306 ~ 14000327 (+) True lrrc59
XM_043253091.1 mRNA downstream 115162 14105956 ~ 14131785 (+) False stxbp4
XM_043253092.1 mRNA downstream 115163 14105957 ~ 14131785 (+) True stxbp4
XR_006252211.1 other upstream 73546 13894361 ~ 13904627 (+) True LOC122355339
TU130395 other upstream 114471 13863091 ~ 13863702 (+) False gucy2g
TU130341 other upstream 381825 13595794 ~ 13596348 (+) True G88082
TU130259 other upstream 533258 13441943 ~ 13444915 (+) True G88016
TU129966 other upstream 1215900 12760374 ~ 12762273 (+) False gall
TU130947 other downstream 1319769 15310563 ~ 15312004 (+) False si:dkey-21c1.4
XR_006252253.1 other downstream 1355763 15346557 ~ 15378101 (+) False qki2
TU130987 other downstream 1460700 15451494 ~ 15763376 (+) False LOC122355837
TU130982 other downstream 1773103 15763897 ~ 15766340 (+) False LOC122355837
XR_006252168.1 other downstream 1886446 15877240 ~ 15923990 (+) False baiap2b

Expression Profile