RNA id: XR_006252177.1


Basic Information

Item Value
RNA id XR_006252177.1
length 2452
RNA type transcript
GC content 0.44
exon number 3
gene id srsf2a
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13972882 ~ 13976511 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGACATCCGGTTACCGCCATTTTAGAGAGTCAACTGCTCTCGGCGTGTTTCTTTGGACTCTCCCGAATGGTTCGCTGTTTTTCTTGGTAATCTCACCAGCAGCTCTTTTATTTCTCGCGTAACGTACTGCAGTAGGGTTAGTGATTCGATATGAGTTACGGTAGACCTCCGCCCGACGTCGAGGGCATGACATCTTTAAAAGTCGATAATCTGACGTACCGCACGTCTCCCGAAACGCTGCGGCGGGTTTTCGAAAAGTACGGCCGCGTCGGGGACGTCTACATCCCGAGGGACCGGTACACGAAAGAGAGCCGCGGGTTCGCCTTTGTCCGTTTTCATGACAAGCGCGACGCAGAGGACGCGATGGACGCAATGGACGGCGCGCTGCTGGACGGGCGCGAACTGCGCGTGCAGATGGCGCGATACGGCCGCCCGCCAGATTCGCATTACGGCCGCCGCGGAGCCCCACCGAGGAGGTATGGGGGGCATGGACGGAGAAGCCGAAGCCGTAGTCCTCGGCGCAGGAGGCACAGCAGATCTAGGTCCAGGAGCAGGAGCCGGTCCCGCTCCCGTAGCAGATCCCGCTACAGCCGATCCAGATCCAGGTCCTACTCCCGTTCCCGGTCTAGGTCCCGTTCCCGCTCCAAAACCCGCACACCACGCAGAAGCAAGTCCAAATCGGCTTCCAGGTCCCGTTCGAGGTCTAAGTCCAAGTCTCGCTCCAGGAGCCGTACTCCCAGGTCCAACAAAGGATCCAAATCGCGATCCAGATCGAGAAGCAGACCCAAATCTCCAGAGGATACTGGAGCAACTGCTGAATCCTGAAATGTAGGTGAGCCTAATGCTTTGtattgaaatgttgttttttcaacTGGAGGAGTTTGTAGTGTCATCCAAGACTGTAAAGACAAGTGtacccttttttttctttaagtttaAAAGTAGTCACAAGCTTTAAGCAGACCAGCTTATGACCCCAATATAAACTCATGTTTGAAGTGGGATAAAGTGAAAGCATGCATAGCTCACTGATCACTTTAAATGGCTGcttaaacttttgttttgccCCTCCACTTTTCTTTCTCAAAGTCCTTCAAGACATCTGAAGATGTGGTAGATGCATTATCTTAAAGGAGGTTTCAGGTTTTACCCAAATTTAGTTTGATGGAGCTGTTATTCACAGCGTTTGTCTGGTATCTCCGTTTCTGCATGAcctaagggttttttttttaattcgcaTCCTAAACTTCACAATGGATATTTGATTTGGAGCTGTCGTGGGTATAACCGTAagtatatttgttttgaaacGTGTACCAGCCAAAATCCATTGATTTCATCTAAATGTGGAATTCTTTCCTCCAAGCTGCTGATTCCTGTTTGCAAAAGAGGAGTTTGGGGCAGTTTGAGAGCAGTTAGTGTGTGATCCGACCATTGGCTGCCTGCTGCTGATTGGCGGTTGCTATGGAGCAGGTCGGTCTCATTGAGTGTTGAGGTGGTGTTGAGATGATGTCAGCTGGTTGAGTCTTCGAAGATCGCATCGAACAGATGTCCGTCTGAGGATACCCAAATTATCCATATATCAGACCGAAAGGTTATTGTAATTTGGTCtaaatctttttaatgttttgttttgtttttttttttttgttgcccacagttgtttttgtatcattacaTTTGAACTCcatgtgatttattaaatgatcTTTATGCCTAAGTTGGGCTACTAGGTGAAATCACTTCTCTTCATTTTTggtagtttttttctttttccccagACTAAAGTAAGttcattttaatccatttttttttttttgttcttaataaacacttattaatgGACAATTTTGGATGTTGTGAATATTTCTTTGACCTTAAAGGACTGGGTAGAGACTGTAATTTGGCCACAAAACTATGTAAAACCGTGACTTCACAAAGATTGCTAACAGCAGGTGTTATGGTTTAAATGGAAAATTTCACAACATGATTCTAATATTCTCTCTTGTGTATTTTCTATGCACTAGGCGCAGTTGCGTAGCAGTTGAGTTTTGCTGGTTAGCTGTTAAGGTGGCGTGTTGCGGTGCAGAGTGCTTGGCTGTTTCCAGTATTCTCCTGATTGCTCCTGTGTAACGCCTTGATttgatttttcttaaaaatttggCTGcagcattttattctttttgcagAAAGATCCTGTGCAAGTCCTTTTGTGAAAACCTGTAAGGCAGATATCTGAGCTTATTTCACATCTCCGGAAGTTCTATAATTTGTGACATGCTCACTTGGTCGTAATTTCCATGTGAATGATGATAATAAAGGTTTTCTTTCTCTGAGCATGGCTGATTTGATGTATACCTAATTTTTACTAGTTTGTCAGTGTCTTGTTTGGTGTGAAGAAGCAAATTAAACCTTCTTTAACTGGAAATAAATTGTGGATTGATACACACA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130423 lncRNA downstream 78524 13824600 ~ 13894358 (-) True G88146
XR_006252233.1 lncRNA downstream 260341 13709055 ~ 13712541 (-) True LOC122355666
TU130373 lncRNA downstream 262615 13710066 ~ 13710267 (-) False LOC122355666
TU130329 lncRNA downstream 433499 13538691 ~ 13539383 (-) False entpd1
TU130281 lncRNA downstream 511637 13460145 ~ 13461245 (-) True G88035
TU130511 lncRNA upstream 17149 13993660 ~ 13994186 (-) True G88205
TU130512 lncRNA upstream 17861 13994372 ~ 13995952 (-) True G88206
TU130548 lncRNA upstream 155408 14131919 ~ 14133138 (-) True G88233
TU130730 lncRNA upstream 421849 14398360 ~ 14398928 (-) True G88355
TU130769 lncRNA upstream 704406 14680917 ~ 14684300 (-) True G88384
XM_043253475.1 mRNA downstream 100327 13864826 ~ 13872555 (-) True tectb
XM_043253476.1 mRNA downstream 100327 13864830 ~ 13872555 (-) False tectb
XM_043253473.1 mRNA downstream 118109 13846173 ~ 13854773 (-) False acsl5
XM_043253472.1 mRNA downstream 118110 13846173 ~ 13854772 (-) True acsl5
XM_043253480.1 mRNA downstream 133426 13719671 ~ 13839456 (-) True vti1a
XM_043253172.1 mRNA upstream 24167 14000678 ~ 14003093 (-) False nat9
XM_043253173.1 mRNA upstream 24167 14000678 ~ 14003034 (-) True nat9
XM_043253147.1 mRNA upstream 67060 14043571 ~ 14081743 (-) True grin2cb
XM_043254310.1 mRNA upstream 113333 14089844 ~ 14102103 (-) True rab40b
XM_043253095.1 mRNA upstream 126421 14102932 ~ 14105922 (-) True LOC122355098
XR_006252221.1 other downstream 281543 13611734 ~ 13691339 (-) False tcf7l2
XR_006252219.1 other downstream 281544 13611734 ~ 13691338 (-) False tcf7l2
XR_006252218.1 other downstream 281544 13611736 ~ 13691338 (-) False tcf7l2
XR_006252220.1 other downstream 281544 13614147 ~ 13691338 (-) False tcf7l2
TU130001 other downstream 1220204 12751904 ~ 12752678 (-) True G87845
TU130594 other upstream 171536 14148047 ~ 14150005 (-) True G88250
TU130741 other upstream 565055 14541566 ~ 14643780 (-) True G88365
TU130744 other upstream 565055 14541566 ~ 14643367 (-) False G88365
TU130763 other upstream 726057 14702568 ~ 14706223 (-) True LOC122355209
TU131171 other upstream 1323786 15300297 ~ 15306493 (-) True si:dkey-21c1.1

Expression Profile