RNA id: XM_043253214.1



Basic Information


Item Value
RNA id XM_043253214.1
length 3799
RNA type mRNA
GC content 0.48
exon number 20
gene id rnf40
representative True

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12717290 ~ 12730928 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGGTTCACATATCTACTGTTCTTCCTGTTTTCCGACCGGAGCGGAGGGAAACATGTCTGGTGCAGGGGGTGGGAAGCGCCCCTCAGGAGGGGATAGTCCCCCTGGCCCTCCTGAAAAAAAGCTGAAGAAAGAGGAGAAGACGACCACCACTCTCATTGAGCCCATCCGCATCGGAGGAGTCTCTTCTACGGAGGAGATGGACATGAAGGTCATTCAGTTCAAGAACAAGAAGCTCTGCGAACGGCTTGAACAGAGGCAGGCTTTGGAAGATGAGTTGAGGGAGAAGATTGAGAAGTTGGAGAAGAGGCAGGCAACTGATGACACCACCCTGCTCATCGTCAACCGCTGCTGGACTCAGCTTGAGGAAAATATCCACGAACTGCTGCAACGTGTGGAGCCTAAGGACTCCCCGGCACCTGTCCAGACCCCTGCCACCCCTCCTATTCCAGACGTCCCAGTTCCTGCTCCAGCCCCATCATCTGCACCTGAACCTTCTGCTCCTTTGCCAGCTCCAATTGAAGGTGAAGACATCATCCCCCAGCCTCCTCCTTCAGCTGAGGCAGAGGAGGAACAACAGCAACAACCAGTGCAAGAAAAGGAACAGACACTGGAGCAAGAGCAGCAACAGCAGCCTCCTGACTCTGTGGGGAAGCCGGCTGATGAACCAGTGGAGGATGGAATTCCCGctcctccacctccaccacctCTCAGCGAGAGCGCAAAGGCTTTCCTGGCTACCCTGGATAACAGCAGTGAGGAGGAGCTCACGCTGCAGCTACAGGACAGGATGCAGTTCAGCAAGGGCACCGTGGCCTGTATGGTCTGCATTTTTGACCGCCTGCATACCACCATTGATGAGCTGTGTACCCGAGTGCAGTCAGCTGTTTGTGAGGGTGACAGTCAGCGAGAGATAATTGCTACAAACCGCACACTTATAGAGGAACATAATCGACTGCAAGATCTTGCTTACTCCCTTCAAGGGAAACACCACAAAATGTCACTGGAgTACAATGAACTGATTGACAAAGTTACAAGTTCTGAGACTAAAGTGTCTGAGATGGAAACCGCTGTGGAGGATCTGCAGTGGGACATTGAAAAACTTCGAAAGAGAGAGCAGAAGCTAAATAAACACCTAGCAGAAGCTCTGGAGCAGcTTAATTCCGGTTACCATGCCACTGGCAGTTCAGGTGGATTACCTGGTGGTCAAATCACACTAAGTATACAGAAGTTTGAGTCTCTGAATGCCGAACTGGAGCAGAACCAGGAACTTGCCAACAGCCGCATGGCAGAGCTTGAAAAACTGCAGCAAGAGCTACAGGAAGCTGTTCGAGAGAGCGAGAAACTAAAGATGGATCTGAGGAATATACCAGAGGACGTGTTGAAGGAGACCCCAGAGTACAAGTGCCTCCAATCACAGTTCTCTCTGCTGTACAATGAGTCTCTAAGTGTGAAAACCCAGCTGGATGAGGCCAGAGCTCTGCTGCTTACTGCCAAAAATGCTCACCTGCGGCAGATAGAGCACATGGAGAGCGATGAGTTGTCACTGCAGAAAAAGTTACGCACTGAGGTCATTCAGCTGGAGGACACGCTGGCCCAGGTGCGCAAGGAGTATGAAATGCTACGGATCGAATTTGAACAGAATCTTGCAGCCAATGAGCAAGCAGGCCCAATAAACAGAGAAATGAGGCACTTAATCAGCAGTCTTCAAAACCATAATCATCAGCTGAAAGGTGATGTGCAGAGATATAAAAGGAAACTTCGTGAGACACAGATGGAAATAAACAAGttgaAGTGCCAGAGTGGAGAGGCAGGTGCACTGATGTTGGAAGAAAGCGTGGGTGATGGAGGACTGGAGGTTAAGAAAGAGGAAGATGAGGaccaggaggaggaggaagagaggaggagggagcTGGAAAGGCAGCGggcacgagagagagagagggaggcagagagagagagggagcgagaaCGAGAGCGGGAGAGACAGCGCAGTGAAGAGCTGAAGAGGAAGGACTCTGACACACTGAAGATGCTTAGAGGAGAGCTCAAAAAAGCACAGGAGTCTCAGAAGGAAATGAAACTACTGCTAGACATGTACAAATCAGCCCCAAAAGAGCAGCGAGATAAAGTGCAACTCATGGCTGCAGAAAAGAAGTCCAAAGCAGAAGTGGAAGAGTTAAGGCAGCGGGTGCGGGAACTGGAGGAGAGGGAAAGAAAGGAAAGCAAAAAGCTGGCAGATGAAGACGCTCTCCGCAAGATCCGTGTGGCTGAGGAGACCATCGAACATTTGCAGAAAAAACTGGCTGCTACTAAACAGGAGGAAGAAGCTCTGCTGAGTGAGATGGATGTGACGGGACAGGCTTTTGAAGACATGCAGGAGCAGAACAGCAGACTCATGCAGCAGCTCAGAGAGAAAGACGATGCCAATTTCAAACTAATGAGTGAGAGAATAAAATCCAACCAGATTTACAAGCTTCTGCGGGAGGAGAAAGAGGAGTTGGCAGACCAAGTGCTTACTTTCAAAACCCAGGTGGACGCTCAGCTGCTGGTAGTACAGAAACTAGAAGAGAAGGAGGGTGTCCTTCAGAGCACACTGGCTGCTCTGGAGAAAGAGCTGGCACTGCGCACGCAAGCCCTGGAGCTCAACAAGCGCAAGGCAGTGGAGGCGGCCCAGTTGGCCGAGGACCTTAAAGTGCAGCTGGAACACACTCAGACCAAGTTGAGGGAAATCCAAGCCTCAGTACTAGACAACCGCACTGCCCGTGAGAGGGAGAGCGTCAACCTCAAGAAAGCACAGGAGGACTTGTCCAGACTGCGGCGTAAGCTggagaaacaaaagaaagttgAGGTGTACACAGATGCTGATGAGATTCTCCAAGAAGAAATTAATCAGTATAAGGCTAAATTGCGTTGTCCCTGTTGTAATACCCGAGATAAGGAGACTGTCCTCACCAAGTGTTTCCACGTCTTCTGCTATGAATGCTTGAAGACTCGCTATGACACACGCCAGAGGAAGTGCCCCAAATGTAATGCAGCATTCGGAGCAAACGACTTCCACCGCATCTACATCACCTAATTTAGTGTGGGCTTTTTGGTGAACTGAATACAGTAGATGAGAAACGAAGGGATGAAAGTGGTCTTGAAGCAGAGGATTACCATAAtatggtattttaaaatgctctgAAGGGCCACTTTCACTCCCATCTGTGATAGGTGGTGCTAGTGACCAAACAGACAGTGACAGAATGGAAACAGTTGTGAAGTAGTCATGGTCTACAGCACTCAAGCAGTGCTTCTTCATTGCAGAGGAATCTATTGAGTTTTGTCTCTCTtacttttttgtgttctttaaaatactgcaatgttttttttgtttgtttgttttttatcagcATTTTGTTGAATGACCATAAAAAAAGTATCTGCTCAGATATCACTATATCATAAATGTCATAACTCCAGAATACAAGTGACATCTAAGGTTCACagaaactgttttgttttgacaatTATGGCCTTATCCGTTTGAGTCATACAGTAACTATCCAGTAATGTGCTTAGTCAGTTTCTATGGTGACACTCTGTTATTGAGCCCCTTAAAGTTAGTAATGAACAGATGTGATGGATACTGGGTGGAAAAAAGGAGAGCTACAGAATTAGAAGCGTAGATGGTGGTGCAGTGATCTTAAGACAAAATGTGAACAGCATTTTTCAGTAGGTACCATATTGTGATATATCACCAACATATGTCAAAACTATTGCACaatttccttaaaaaataaaaactggatAAAGTTA

Function


GO: NA

KEGG:

id description
K10696 BRE1; E3 ubiquitin-protein ligase BRE1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU129858 lncRNA upstream 158688 12556682 ~ 12558732 (+) True G87753
TU129812 lncRNA upstream 239511 12476805 ~ 12477909 (+) True G87718
TU129739 lncRNA upstream 477219 12239783 ~ 12240201 (+) True G87669
TU129711 lncRNA upstream 558912 12158246 ~ 12158508 (+) True G87665
TU129710 lncRNA upstream 559605 12157586 ~ 12157815 (+) True G87664
TU130050 lncRNA downstream 169144 12900072 ~ 12900399 (+) True G87891
TU130099 lncRNA downstream 465056 13195984 ~ 13197074 (+) True G87934
TU130188 lncRNA downstream 618021 13348949 ~ 13383848 (+) True G87979
TU130193 lncRNA downstream 629386 13360314 ~ 13361050 (+) True G87981
TU130250 lncRNA downstream 698485 13429413 ~ 13431559 (+) True G88010
XM_043253215.1 mRNA upstream 2748 12709411 ~ 12714672 (+) True phkg2
XM_043253601.1 mRNA upstream 20181 12691518 ~ 12697239 (+) True nfe2l1b
XM_043253603.1 mRNA upstream 20181 12691519 ~ 12697239 (+) False nfe2l1b
XM_043253602.1 mRNA upstream 20181 12692089 ~ 12697239 (+) False nfe2l1b
XM_043253058.1 mRNA upstream 33803 12677700 ~ 12683617 (+) True cdk5rap3
XM_043253570.1 mRNA downstream 15623 12746551 ~ 12750006 (+) True znf668
XM_043253571.1 mRNA downstream 19698 12750626 ~ 12751732 (+) True gjz1
XM_043254343.1 mRNA downstream 29465 12760393 ~ 12762731 (+) True gall
XM_043254110.1 mRNA downstream 35197 12766125 ~ 12773695 (+) True valopb
XM_043254482.1 mRNA downstream 60361 12791289 ~ 12812984 (+) True gabrz
XR_006252241.1 other upstream 772565 11936842 ~ 11944855 (+) False nbr1a
TU129235 other upstream 1015765 11694844 ~ 11701655 (+) True G87315
unassigned_transcript_1922 other upstream 1633050 11084277 ~ 11084370 (+) True trnai-uau_3
XR_006252209.1 other upstream 2135665 10542229 ~ 10581755 (+) False svila
TU129954 other downstream 1836 12732764 ~ 12737649 (+) True G87817
TU129966 other downstream 29446 12760374 ~ 12762273 (+) False gall
TU130259 other downstream 711015 13441943 ~ 13444915 (+) True G88016
TU130341 other downstream 864866 13595794 ~ 13596348 (+) True G88082
TU130395 other downstream 1132163 13863091 ~ 13863702 (+) False gucy2g

Expression Profile