RNA id: XM_043253233.1


Basic Information

Item Value
RNA id XM_043253233.1
length 1694
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC122355185
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2704288 ~ 2708929 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atcatattttttgtgttttctgtattcAGCCATGTTAAAGAAGCCGGTGGTCACGGAGGTCCGAACCCCTACTAACACGTGGAGTGGTCTGGGATTCTCAAAGTCTATGCCTGCAGAAACTATTAAGGAGTTGCGCCGGGCTAACCATGTGTCTTATAAACCTACCATGTCAACTACATATGAGGGGTCGCCTCTAGCCCTGTCCCGCTCTAACAGTAGAGAGGGGGTGGCGAGTGGCAGTGACTCGGATAACTGGAGGGAAAGGAATGGGAGCGGGCTCCCAGCACACGGAGACTTCCCTTCTCCCATCAGCCCCAAAAGGAAGCAGAACAAAACAGaGCACTACCTAAGCAGCAGCAACTACATGGACTGCATCTCGTCGGTGACGGGAACTAATGGCTGTAATCTCAACACGTCTTTCAAAGGATCGGATCTGCCTGAGCTCTTCAGTAAACTTGGCCTCGGGAAATACACCGACGTCTTCCAGCAGCAGGAGATTGACCTTCAGACGTTCCTCACGCTGACGGATCAGGACCTGAAAGAGCTCGGCATCACTACATTTGGAGCCCGCAGGAAAATGCTGCTGGCCATTTCAGAGCTGAATAAGAACCAAAGAAAGTTCTTTGAGCCGCCCAACATCCGCTCCTCGTTCCTGGAAGGGGGCGCCAGCGGTCGGCTTCCGCGCCAGTTCCACACAGACATTGCCAGTGTGAGCGGGCGCTGGTGAGCCCATGCCAACAGACAGCCTGAAACTGCACAAATTCCCATTCCCAACTCCAACCTGATACACAGTACTGGACCAAAACCTGGACCTTCTGAACCTTCTGtgccaaataaacaaaagtctATGGATCAGAGGTTAAGGGTCAGAGAACTGTTGAATATTATATGCAGTGTGGTACATTATGCATTATGGTACTCATTTTACAATGAAGGAAATGTAGTAAAGGATGATTGGAGCTCCTGCACTGTGCTTGTATATGGAGCAggcagattttttatttatatgcttgTCTTAGGCTTCGACATACTAATTCTTTGCACTTTAAGATGCTAAATGTTTTGTCCATGGACAGATTCGCCTGACTAGACGCgcctacattttatttaaagcacttaAATGGATATCAAGCCAAAGTGTTATATCCATAAGGGAAGCTTATCTCATCCCACGGCGGAAACAATCACCAGCCTTTGGTTATTACTTATGGATTTCATTCAGAGTAGACGGCATATTGCATTTGACAGGAATGAAATGGAGCGTACGTCTATCCCTCACAGGCTTGTTTTCATTCAGGTCGAATTAAAGCAGTCTTTCCCCCGATTGAATTCCACAGTACTTTCTCTGTACGTTATTTCTATACctataaatagtttatttttaaaaggaaatttaaaaatttaaatacgtTCAGTGTATGACTTTAGTTCTTCTATGGAATTCAAAAGAAGATGCTTCGAAGAATGTTTCGGCTGTTTTTatccatacagtgaaagtcaacTGAGTGCATTAGTTGGTTCTAGAAGTATTTATGCTGTTCATTTTTCCCAAGCATTTACAGGTAATTAACCTTAcaaataagatgtttttaaatatttatggccGTTATATTTATAGTATGAGCTATAGTCCAATCTCCATAAAAGTTGTCATGCTGCATGGGCTCAcctaattttaaatttgaattttcgTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126237 lncRNA downstream 23971 2680044 ~ 2680317 (-) True G85216
TU126235 lncRNA downstream 24997 2678722 ~ 2679291 (-) True G85214
TU126176 lncRNA downstream 127382 2573311 ~ 2576906 (-) True G85165
TU126193 lncRNA downstream 196327 2506178 ~ 2507961 (-) True G85177
TU126188 lncRNA downstream 218084 2485194 ~ 2486204 (-) True G85174
TU126283 lncRNA upstream 82991 2791920 ~ 2792523 (-) True G85235
TU126303 lncRNA upstream 160211 2869140 ~ 2869689 (-) True G85250
TU126331 lncRNA upstream 210256 2919185 ~ 2947389 (-) True G85257
TU126448 lncRNA upstream 241907 2950836 ~ 3037584 (-) True G85342
TU126466 lncRNA upstream 447887 3156816 ~ 3159743 (-) True G85355
XM_043253150.1 mRNA downstream 88001 2605131 ~ 2616287 (-) False slc4a1b
XM_043253149.1 mRNA downstream 88001 2605131 ~ 2616287 (-) True slc4a1b
XM_043253151.1 mRNA downstream 90535 2605131 ~ 2613753 (-) False slc4a1b
XM_043254406.1 mRNA downstream 100596 2597896 ~ 2603692 (-) False atxn7l3b
XM_043254407.1 mRNA downstream 100598 2597896 ~ 2603690 (-) False atxn7l3b
XM_043254049.1 mRNA upstream 141047 2849976 ~ 2860000 (-) True LOC122355585
XM_043254050.1 mRNA upstream 161192 2870121 ~ 2877710 (-) True LOC122355586
XM_043254449.1 mRNA upstream 295500 3004429 ~ 3083353 (-) True LOC122355866
XM_043254446.1 mRNA upstream 296667 3005596 ~ 3063570 (-) False LOC122355866
XM_043254447.1 mRNA upstream 298556 3007485 ~ 3063570 (-) False LOC122355866
unassigned_transcript_1807 other downstream 210497 2493710 ~ 2493791 (-) True trnal-uag_3
TU125823 other downstream 756876 1870773 ~ 1947412 (-) False ank3b
TU125629 other downstream 1807258 891132 ~ 897030 (-) False dlx4b
XR_006252247.1 other downstream 2343976 340273 ~ 360312 (-) False prr12a
TU126277 other upstream 58979 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 381856 3090785 ~ 3092413 (-) False LOC122355711
TU126480 other upstream 549602 3258531 ~ 3299688 (-) False G85366
TU126481 other upstream 589619 3298548 ~ 3299606 (-) False G85366
TU126483 other upstream 589619 3298548 ~ 3299606 (-) True G85366

Expression Profile