RNA id: XM_043253237.1


Basic Information

Item Value
RNA id XM_043253237.1
length 1694
RNA type mRNA
GC content 0.44
exon number 11
gene id nmt1b
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7225862 ~ 7233649 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTCCTTGCTGCACATTAAGATAAGCTCTTACACCACAAACACCCACAACTACACAGCTGAAAGATCACATCTAGTTGCTCTAATACTTAAGAACACATTCATGGCTGAACAGAAAAGTTTtgaaaagAGCTTAGAGGAAGACAGGGGAGCTAAAGGCAAAAAGAAGTCTAAGAAGTACAAGGACCAAACATGGGCTAAAGAGGGGCCGAGAGACCCTTTTGAAATGCTGGACTCTCTTTCTGAAGAGAAGCAGCAAGAGATTCAGAAAGCCCTACACCTGTTTTCCTTTGGTCATGGGCCTCCAAAGAACCTACAAGAGGCTCAAAGACACACATACCGCTTTTGGGACACTCAGCCAGTCCCCAAGATAGATGAGAAAGTGACATCACATGGACCAGTTGAGTCAGAGAGGCCCAGTGTTCGAGAGGAGCCATTCTTACTGCCACAGGAATTCATTTGGCACACACTCAATCTGGACAAACAAGAGCAGCTTGGAGAACTGTGCGACTTGCTGAATGAAAACTACACAGAAGAGGATGACAACACACTTCGTCTGCACTACACTCCACAGTTCTTGCTctgGGCTCTGTGTCCCCCTGGATGGCAATTAGACTGGCATTGTGGAGTTCGAGTGAAGTCCAGTCAAAAACTAGTTGGATTCATAAGTGCCATTCCTGCTACTATTAAAGTATTTGACACAGAACTAAAGATGGTGGAGGTGAACTTCCTGTGTGTACACAAAAAGCTTCGCTCTAAAAGACTAGCACCAGTCCTAATCAAGGAGCTCACCAGACGGGTCCATCAGCAGGGTATACATCAAGCAATATACAGCACCAATGCTGTCCTACCAAAACCTATTGCAAGCTGTAGGTATGATGGAAATTATGAGGATTTCTCTTTCCCAGACCACCACTTCTGTATTGTTTGGGGTATTGTTTCAAACAAAATTCTCTTGATGTCTGTTAAAAGGTATTGGCACAGATCGCTGAACCCACGAAAGCTGATTGAGCTGAATTTCTCATCTCTTACTCGTAACATGACCCTCCAGCGTGCTGTCAAGCTTAATCGCCTCTCTGAGACAACAAAAACCAAAGGTCTTCGCCAAATGACTGTTCAAGATGTGCCAGTGGTCCAGGATCTTCTGCATGAACATGTGCAGGCTTTTCATCTCTCTCCTTTTCTGACCCTGGATGATGTTGAACACTGGTTTCTGCCTCAAGATGGTGTGATTGACACATATGTTGTGGAGAGCATGGCTGGTACCATAACTGACATGGTGAGTTTCTACACACGTCCCTCTGCTGTTCTGAACCACCCTGTGCATAAAGGCCTGAGGGCAGCCTGTGTTCTTTATTGCATCAGCAAGGCTACCCCACTGCTGCAGCTAATGGAGGACATCCTTATCATCTGTAAAACAGAAGGATTTGATGTGTTCTCTGCTCTGGATGTAATggataataaaacttttttggaACCGCTCAAGTTCAGAATGGGAGATGTACACAAGCAGTATTACCTCTACAACTGGAGATGCCCTGAGATGCCCTCAGACAAGTTGGGTGTAGTGCTGAAGTAAAGGCATTTTGTGCACAAATGGACAATGAAATACATAAGCTTGTGGAACTCATATAGCACATTTCTATTTCTacgtataaatattaaataaatcgtaatttttcattatgaaatttg

Function

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127475 lncRNA upstream 3907 7221528 ~ 7221955 (+) True G86131
TU127443 lncRNA upstream 52533 7171397 ~ 7173329 (+) True G86110
TU127446 lncRNA upstream 52879 7129610 ~ 7172983 (+) False G86110
TU127436 lncRNA upstream 130552 7094999 ~ 7095310 (+) True G86106
TU127427 lncRNA upstream 214450 7011188 ~ 7011412 (+) True G86097
TU127484 lncRNA downstream 66223 7297318 ~ 7297543 (+) True G86140
TU127485 lncRNA downstream 66588 7297683 ~ 7298034 (+) True G86141
TU127489 lncRNA downstream 72043 7303138 ~ 7304848 (+) False G86142
TU127490 lncRNA downstream 72043 7303138 ~ 7304848 (+) True G86142
TU127492 lncRNA downstream 72043 7303138 ~ 7304848 (+) False G86142
XM_043254397.1 mRNA upstream 6418 7183430 ~ 7219444 (+) True plcd3b
XM_043253996.1 mRNA upstream 263878 6799786 ~ 6961984 (+) True plxdc1
XM_043253998.1 mRNA upstream 263879 6799786 ~ 6961983 (+) False plxdc1
XM_043253997.1 mRNA upstream 263880 6799786 ~ 6961982 (+) False plxdc1
XM_043253999.1 mRNA upstream 290790 6799785 ~ 6935072 (+) False plxdc1
XM_043253234.1 mRNA downstream 2843 7233938 ~ 7284444 (+) False svild
XM_043253235.1 mRNA downstream 2848 7233943 ~ 7292140 (+) True svild
XM_043254021.1 mRNA downstream 135239 7366334 ~ 7374805 (+) False znf281b
XM_043254020.1 mRNA downstream 135240 7366335 ~ 7374805 (+) True znf281b
XM_043254374.1 mRNA downstream 147832 7378927 ~ 7385963 (+) True muc13b
TU127344 other upstream 703291 6521829 ~ 6522571 (+) True G86029
TU127334 other upstream 784336 6440821 ~ 6441526 (+) True G86019
TU127298 other upstream 1009295 6214919 ~ 6216567 (+) True G85986
TU127259 other upstream 1129130 6095948 ~ 6096732 (+) True G85962
XR_006252206.1 other upstream 1282282 5886952 ~ 5943580 (+) False becn1
TU127497 other downstream 72043 7303138 ~ 7304848 (+) False G86142
TU127500 other downstream 76829 7307924 ~ 7308229 (+) True G86143
TU127672 other downstream 584728 7815823 ~ 7844083 (+) False LOC122355675
unassigned_transcript_1921 other downstream 1474165 8705260 ~ 8705331 (+) True trnaq-cug_20
XR_006252198.1 other downstream 1605353 8836448 ~ 8852449 (+) False arsg

Expression Profile