RNA id: XM_043253246.1


Basic Information

Item Value
RNA id XM_043253246.1
length 1519
RNA type mRNA
GC content 0.52
exon number 2
gene id six2b
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11217292 ~ 11219552 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCCAGGAGGATGCGCTGGGCGTCCGTACACACCAGGCACTCTGTAAGAGATATGATAAACAGAGGGCGGGCTGATAGCTAAGGACAGTCTAGGAAAGAATCTATTGCGCGCGACGAGAGCGCGTAAGAATGAAATGATTAGCGCGTCACGATATTGCGGCTAAGTGATTGAGCGATGCAGGACACTGACTCAAACTGTTAGCTTTGCGTTTGTTTTGCTTTGGAccgttttttaaaatcttttcatGGAAAATGCACGCCAAGAACTGAATTTGTTCAGTTGGGGGAGCCTCGTTGCTTGAGTTTCCAAAGTGGATATCGCATTAAAAACCAACGTTTAGACGCGCGCGCGCGGGAGACCGGGTGTCCTATTGCCTTGAACTATGTCTATGCCACCAACTTTTGGATTTACCCAGGAGCAGGTTGCCTGCGTCTGCGAGGTCCTTCAGCAAGGTGGGAGTATCGAACGTCTCGGGCGCTTTCTGTGGTCCTTACCTGCCTGCGAGCACCTCCACAAAAACGAGAGCGTATTGAAAGCGAAAGCCGTGGTGGCTTTCCACCGCGGCAACTTCAGGGAGCTCTACAAAGTATTAGAGAGCCACCAGTTCTCTCCGCACAACCACCCTAAACTGCAACAGCTCTGGCTCAAAGCTCACTACGTCGAAGCGGAGAAATTACGCGGTCGTCCTCTGGGCGCAGTAGGAAAGTACCGCGTACGCAGAAAGTTTCCGCTGCCTCGCACCATTTGGGATGGAGAGGAGACCAGCTACTGTTTTAAGGAGAAGAGCCGGTGTGTGCTTAAAGAGTGGTACACGCACAACCCGTACCCTTCTCCGAGGGAGAAGAGAGAACTGGCCGAGGCCACGGGCCTCACCACGACGCAGGTCAGCAACTGGTTCAAGAACAGGAGGCAGAGGGACCGCGCAGCAGAAGCAAAGGAAAGGGAAAACGATGGCGCAAATCCAAACGGCCACAACCCGCTGACCTCTCACGTGAACGAAAACAAATCTCTGTGCGAGAGTTCAGAGGACGACAAATCCCCCGCGGCGACCCCGGATCACAGCTCCATGAGCCCAGCCATCCTCCTGCCCTCCAGCTCCGGCCTGCCTCCCCTGCACAGCTTCGCGCCTCCGCCCGGCCCCAGCGCCTCCATCCTCCCGGTCAGCGGCCCGGACGTTCAGAGCCACCACCACTTCTCCATGCACGACGGCCTCCTCAACTCCATGACGGCCAGCCTGGTCGAACTCGGATCATAAGAAATAAAACTCAGCATCTTTGACTCCCCCCCCACTCCCAGTTACTAGCTTCGTTATCATAGGCtaccaaacattttattaggCAAGCTTAGAGGacattagacaaaaaaaaaataaaaatccaagaACTAGCCTACCAGATGGCGGGCCTACGTGAAAACCGTTTCCATAAGAATCCTGTAACAAATCGATGTAATCAAGGGATAGTTTTTGATATGTCTAGCTataaaatgaactaataaaatatatatttaataacgtC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048793 pronephros development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15614 SIX1; homeobox protein SIX1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129411 lncRNA downstream 52253 11108896 ~ 11165039 (-) True G87449
TU129412 lncRNA downstream 91013 11124447 ~ 11126279 (-) True G87450
TU129386 lncRNA downstream 145527 11071249 ~ 11071765 (-) True G87429
TU129382 lncRNA downstream 210354 11005008 ~ 11006938 (-) False cript
TU129351 lncRNA downstream 321145 10895841 ~ 10896147 (-) True G87406
TU129359 lncRNA upstream 39465 11259017 ~ 11298534 (-) True G87409
TU129455 lncRNA upstream 52189 11271741 ~ 11273302 (-) True G87482
TU129457 lncRNA upstream 58772 11278324 ~ 11283586 (-) True G87484
TU129458 lncRNA upstream 58772 11278324 ~ 11283586 (-) False G87484
TU129370 lncRNA upstream 92920 11312472 ~ 11315998 (-) True G87417
XM_043254109.1 mRNA downstream 94454 11119418 ~ 11122838 (-) True zfp36l2
XM_043253869.1 mRNA downstream 133256 11082205 ~ 11084036 (-) True hcar1-4
XM_043254162.1 mRNA downstream 162486 11049679 ~ 11054806 (-) True kcng3
XM_043254161.1 mRNA downstream 162487 11049679 ~ 11054805 (-) False kcng3
XM_043254163.1 mRNA downstream 171403 11044276 ~ 11045889 (-) False LOC122355648
XM_043254472.1 mRNA upstream 104849 11324401 ~ 11331793 (-) True sncgb
XM_043254473.1 mRNA upstream 104849 11324401 ~ 11331786 (-) False sncgb
XM_043253747.1 mRNA upstream 124907 11344459 ~ 11374806 (-) False bmpr1ab
XM_043253748.1 mRNA upstream 124907 11344459 ~ 11374806 (-) True bmpr1ab
XM_043254262.1 mRNA upstream 156243 11375795 ~ 11392390 (-) True ldb3b
TU129388 other downstream 171410 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 1727980 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1727980 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1728002 9481559 ~ 9489290 (-) False ormdl3
TU129464 other upstream 101871 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 613327 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 729719 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1429831 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 1451073 12670625 ~ 12675472 (-) False prr15lb

Expression Profile