Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043253256.1 |
| length | 2778 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 4 |
| gene id | foxh1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056710.1 |
| NCBI id | CM032079.1 |
| chromosome length | 20499150 |
| location | 5535173 ~ 5540436 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0007179 | transforming growth factor beta receptor signaling pathway | biological_process |
| GO:0060070 | canonical Wnt signaling pathway | biological_process |
| GO:0001706 | endoderm formation | biological_process |
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:2000223 | regulation of BMP signaling pathway involved in heart jogging | biological_process |
| GO:0010159 | specification of animal organ position | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0035054 | embryonic heart tube anterior/posterior pattern specification | biological_process |
| GO:0060971 | embryonic heart tube left/right pattern formation | biological_process |
| GO:0001568 | blood vessel development | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0048327 | axial mesodermal cell fate specification | biological_process |
| GO:0014028 | notochord formation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0048382 | mesendoderm development | biological_process |
| GO:0032525 | somite rostral/caudal axis specification | biological_process |
| GO:0051090 | regulation of DNA-binding transcription factor activity | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0021501 | prechordal plate formation | biological_process |
| GO:0021508 | floor plate formation | biological_process |
| GO:0060063 | Spemann organizer formation at the embryonic shield | biological_process |
| GO:0032444 | activin responsive factor complex | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0019904 | protein domain specific binding | molecular_function |
| GO:0008301 | DNA binding, bending | molecular_function |
| GO:0070412 | R-SMAD binding | molecular_function |
| id | description |
|---|---|
| K09400 | FOXH; forkhead box protein H |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU127056 | lncRNA | downstream | 108662 | 5423084 ~ 5426511 (-) | False | lsm5 |
| TU127055 | lncRNA | downstream | 109046 | 5423084 ~ 5426127 (-) | False | lsm5 |
| TU126767 | lncRNA | downstream | 1081897 | 4452755 ~ 4453276 (-) | True | G85572 |
| TU126762 | lncRNA | downstream | 1121811 | 4412624 ~ 4413362 (-) | False | LOC122355055 |
| TU126764 | lncRNA | downstream | 1122973 | 4411340 ~ 4412200 (-) | True | G85569 |
| TU127129 | lncRNA | upstream | 186868 | 5727304 ~ 5731090 (-) | True | G85868 |
| TU127155 | lncRNA | upstream | 270221 | 5810657 ~ 5814446 (-) | True | G85889 |
| TU127161 | lncRNA | upstream | 279913 | 5820349 ~ 5821178 (-) | True | G85891 |
| TU127162 | lncRNA | upstream | 296936 | 5837372 ~ 5837674 (-) | True | G85892 |
| TU127163 | lncRNA | upstream | 298123 | 5838559 ~ 5838957 (-) | True | G85893 |
| XM_043253798.1 | mRNA | downstream | 30344 | 5487800 ~ 5504829 (-) | False | stat5b |
| XM_043253797.1 | mRNA | downstream | 30344 | 5487800 ~ 5504829 (-) | True | stat5b |
| XM_043254413.1 | mRNA | downstream | 48893 | 5477522 ~ 5486280 (-) | True | ghdc |
| XM_043254308.1 | mRNA | downstream | 109180 | 5423503 ~ 5425993 (-) | False | lsm5 |
| XM_043253097.1 | mRNA | downstream | 115307 | 5415899 ~ 5419866 (-) | True | emc9 |
| XM_043253870.1 | mRNA | upstream | 24172 | 5564608 ~ 5600663 (-) | True | adam11 |
| XM_043253871.1 | mRNA | upstream | 28900 | 5569336 ~ 5595564 (-) | False | adam11 |
| XM_043253872.1 | mRNA | upstream | 28901 | 5569337 ~ 5600458 (-) | False | adam11 |
| XM_043253254.1 | mRNA | upstream | 62245 | 5602681 ~ 5613207 (-) | True | dbf4b |
| XM_043253255.1 | mRNA | upstream | 63834 | 5604270 ~ 5613207 (-) | False | dbf4b |
| TU127052 | other | downstream | 108662 | 5423084 ~ 5426511 (-) | False | lsm5 |
| TU127053 | other | downstream | 109046 | 5423084 ~ 5426127 (-) | True | lsm5 |
| TU127021 | other | downstream | 138261 | 5322478 ~ 5396912 (-) | False | G85779 |
| TU127027 | other | downstream | 138261 | 5322478 ~ 5396912 (-) | True | G85779 |
| TU127020 | other | downstream | 138261 | 5390608 ~ 5396912 (-) | False | G85779 |
| TU127203 | other | upstream | 444553 | 5984989 ~ 5987780 (-) | True | G85925 |
| TU127212 | other | upstream | 450477 | 5990913 ~ 6007107 (-) | True | G85930 |
| XR_006252216.1 | other | upstream | 511287 | 6051723 ~ 6054353 (-) | False | LOC122355418 |
| XR_006252215.1 | other | upstream | 523862 | 6064298 ~ 6073432 (-) | False | LOC122355418 |
| TU127372 | other | upstream | 1129883 | 6670319 ~ 6671247 (-) | True | G86049 |
