RNA id: XM_043253305.1


Basic Information

Item Value
RNA id XM_043253305.1
length 5843
RNA type mRNA
GC content 0.48
exon number 23
gene id caskin2
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8896217 ~ 8943033 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATAACTGTTAAATTAGCGTCGAATTAACACTTACGGCATACATTCAAGCTGCACGACACGATATAGACGTATCTGGAGCATTGCGTCCTGCAATTTGAACACAGAGTATTTTATAGGAGTTGTTCGTCGTTTGTGGGATCCTTTTTCTGGAATATACAAGAGTCTTCACAGCGCACCTTTCAGGAAGAGCGAGCAGCAGGCGGGCGCGTGACTGATCCGTGCGCGTTCACGCACCGGCCACTTGCGTTGTGTCAAACACGTTCAAGTATGGCATTGCTCTTTTGCGATTTACCGAACAGAAACGGAAAACATAAACGGGATTACACTTATTGAACTTCGTCGGTTTCGTGGAAGAAGTGGCTCGAAGCCATTATATCGACCTGACTACGCGCCGGTTTGCTTGTGATGTTCTGGCTTTAAGGATGCAGTCATCTACTTCATGTTGCTTAGGACCATAAATTAAGTGGTCAGACCAtatgtgtaaaaacaaaacaaaaagcggTAAGGTAAACCAAAAGCCACATCCAAAGTTCCATGAACAGAGAGAATCATGACATTGTGAATCCAGATTATAACACTTCTGGAAGCTGGACGAAAGCCATGGGAAAGGAGCAGGACCTTCTTCTGGCTGTGAAGAATGGAGACCTTCCTTTAGCTCACAAACTTCTGGCCAAGATTAAGACCAACCGAAATAAGTTGCTGGGCTCCACAAAAAGGCTAAATGTGAACTACCAAGACCAAGATGGTTTTTCAGCTCTTCATCATGCGGCTCTCACTGGCACCACTGACCTTTTGTCTCTGCTGTTGGAGGCACAAGCCTCCGTGGACATCAAAGACAGTAACGGTATGCGTCCACTGCACTACGCTGCCTGGCAGGGGAAGGCTGACTCTGTACTTATGCTGCTGAGAGCTGGAGCTTCTGTGAATGGAGCTTCACAAGACGGACAGATCCCTCTCCACCTGGCTGCACAGTACGGACACTATGAGGTGTCTGAAATGCTACTACAACACCAGTCCAACCCCTGTACTGTCAACAAGGCCAAGAAGACCCCTCTGGACCTGGCCTGTGAGTTTGGCAGACTCAAGGTGACCCAGCTGTTGTTGAGCAGTAACATGGTGGTAGCTCTCTTAGAGGGGAACGGCAGGGATAACACCCCCCTGCATCTCGCTGCCCGCAATGGTCATAAGGACATCATCAGACTGCTGCTAAAAGCTGGGATTGACATCAACAGGACCACTAAATCCGGAACGGCTCTACACGAGGCCGCCCTCTATGGGAAAACGGAAGTAGTAAAGTTATTGCTTGATGCTGGGATTGATGTGAACATCCGCAACACCTACAATCAAACAGCCCTGGACATTGTGAACCAGTTCACCACTTCACATGCCAGCAAAGAAATCAAACAACTCCTTAGAGAAGCTAGCGGAGCATTGCAGGTGAGAGCTTTGAAGGACTACTGGAATCTCCATGACCCAACTGCACTCAATATCCGGGCAGGAGATATAATCATGGTCTTAGAGCAGCACATGGATGGACGTTGGAAAGGACACATCCATGACAGTCAGAGAGGGACCGACCGAGTGGGGTTCTTCCCTCCCTCCATCGTGGAAGTCATTAGCCGCAGATCAGGGGGCGTTCTCTCCCGGCAAGCCTCACTGCCCATCCAGAGACATCACATTCTGTCCAGAGCCCTGTCCTCACACAGTTCTCATCACACCTCTCACACTGACGACTCCTACACCTTATACTCATCCACCCGTCCTGTACTGAGTCACCTCAATGGGCTGGATCAGCACACAGGTGCGATTCCCGAAAGTCCCAGTGCCCTGTGTAAGCCAGCTAGTCCCAAAGTGCCAGAGGATGTTTGGGTCCTCAGGACCTCTCTTAATGcaggtGACAGGAACAGTGTGGGCAGTGCAGGCAGCATGGGCAGCAGCCGCAGTGCTGGCAGTGGACAGAGCACTGAGGGAAACTTTCCACACAATGGACCCAATCAGTCACCTTCTGCCGTCCAGGACAAGCTGCCTCCCTCTGCTGGAGAACTTGTGGAACAGTGCAGCCAGGCCCCTGACCCCGCAAAGCAGACGGACACTCATTCAGgTGCTCTTGGGTGGAGGATTCCTCTGAGCAGCTCCAGACCTGGAGAACATGTCATACACCCACAGAAACTTCTGGATGGCAAGGATGCTGAGGCTATTTACCAGTGGCTCTGTGAGTTTCAGCTTGAGCAGTACACATCTAATTTCCTCACAGCTGGCTATGATGTGCCCACAATCAGCAGAATGACCCCTGAGgatCTCACTGCTATTGGCGTTACAAAGCCTGGTCATCGCAAGAAGATCTCCATGGAGATCGGCAACATGAATATCCCAGAGTGGTTGCCGGATTACATTCCATCTGATATTGGGAAATGGCTCAGCGCTATTGGGCTGCCACAATACCAGAAAAAGCTAGCAGAGAATGGATACGACTCCATCAGCATAGTGCAGGATATCACATGGGAAGATCTACAGGAAATTGGCATTACTAAACTGGGCCATCAGAAGAAGCTGATGCTTGCTGTTAAGAAGCTCAGTGACGTCCAGAAGGCTCGTAAGAACCAGGCTGAGGGGCAGGCGTTGCTACAGCGCAGAAGAGCTCCTCCCACCCTCGAGCTTGTGGCCATCGAGCATCACGACAGCTCCGAATGCCCCTCGTCACCTCTATCACCAAAGATGCTTACCTTCCAGGACAGCGAGCTGAGCGTTGAGCTACAGAACGCCATGGCTCGCAGCGGACACGGTGGAGGCCAAGATGCTTTCGGAAACATGACTGGAACGTCCATGCGTCTTAGTCAAGAAAGCATCGGCACACGGTCAGGAGGTTCAGGACGGTCGCAAGAACGTCCAATGGCATCGGTAACCCCCAACAGCCGCTCACAAGAGAGCCTAGGCAGTATGGACAACAGTCCCAGCAAGGAATCTCAGGATAGAAACCAAATATCACCTGTAAAAATGGCGCCAGTGTTGCCGCTACAGCATCATCACTCCTCCTCTGGCAGTCCAGTGAGAACGCCACCCGTAACTACTAGTAAAATAGCACGCTTCGCATATCCTCCCATTCTTACCAAACCTAGACCGGTGGTTTCTCCCTCTCAGCCCCATCATGGATCACCTCATCAGAGGGGCTTCAACTACCTGCAGCATCAAAACTGCAACACGGGAAGCCCAAGTCCAATCAGAGCCCCGCAGCCAAATGACCCATCCCGCTCCAAAAAGCGCACTCAGAGTCTTTCACGTTATGCCATGTCGGATGGAGAGAACGAAGAAGATGACATCTCAACCCCTATGACGACAACCGCCAATGTGGCGTCTTATGCCACGCTCACTCGCAAGCCCGGCCGCAGCCAACCGTCTTACAGTTCCGGTGAGCGCCAAGTGGGCCGCAGTCATTCCTTCGCCATACGTGCCAAGAGGAAAGGTCCCCCTCCTCCCCCTCCAAAGCGACTAAGCTCTGCCCCAAGCAGGGTAACCACAAGTGGGGTCGAAATGGAGAGCGCAGGAAGTGTCCGAAGCATCGCAGCCAGGCTGGAGAGCAATACAGGAAGCCCGAATAAGACATGCAACAGCCCTGTTTTTAAAGCCATGTCCCCAGCCATCTCGCCAAAACATATGGAAAACCGTAGGAGGACCGCTAGTGAATCTTCAACGTACGAAACGAAGCACGGCGGAGAAACTCCTCTGAGGAACCAGCAAGGTTCAACGTCCTCACAGGAGAGCATACCTTTCGCAGAAGAGGGCAAAGTTACCATCAAACAAAGGACCAAAATAGCATCCGCTAAGATAGAGTCTGAGGCCGCTGTTGAAATTCTGAAGCCGGTGCAATCTATCAAATCATCCCTAGAGGTGCCAGAGTTTAACTTAAAGGAATCAGACACAGTCAAAAGAAGACACAAGCCAAAGGAACTGCAGATGAAAGGATCTCCACATAAACCTCCCACCCCTTCTAAGCCCACACGCCATTCTTCTGCAGCAAACTCAGGAGTGACAGTCAGCGTGGTCCAGAGCGTGGCCTTTGCCGTCTCACCTCCATGTAGTCCTCTGGCTCGCTGTCCACAAAACAAAGCAGCTCAAGGTCAGTGTGTGCTGGCAGGAAAGCCACAGGCTGTGACGGAAGGCCAGAACGTGCTGGTCCACAAACGACTTGAGCAAACCAGCACATCTCTCGAGGCAGCACTTAAAGTTGTGGAGAAGAAGTTGGCTCAGGAAGATCCAGCAGACAGGGGCATTAGCACAGTGAAGTCAGCTGGGAACATTCTTGATGATATAGGGAACATGTTCGATGATCTTGCTGACCAGCTGGAAGCCATGTTGGATTGACCTACTGTAATTTCTACAGGTATAACCTTTGTGCTGGGCCTTCATATGGGAGCTTCTGGATGTTTTAGACATCTCGCACTTTGTTTACACACTTCAGTGATCCTGCTTACAAGCGTTGGTTTTACAGTTGAATTACACGAGTTAATTTAATGGACCGCAGTGCATTTGTTGGCTGGATCGTGCCTCAGATTTCCAAAAGATCCACTTTAGAACTTCGACGTATCTTTTACTGTTGCTTTCTGCATCTTCGTCTCGCTCGGACAGGACGTATCTGAAGTGAAGATTGCCGAATGTAAGCACTTACTGTTCAGATCATCTGTGCTAAAGCTCTTTCGACAGAGGCTTTAATTTCCTGTTGTGCTCACAGTTGGCCTCTAGCAAATGGATATTCGGTGTAAAATCAAAGTGAGGTACAACCTGAACTTGGTTTCAAGTGTCTGAGATTCATCACTCTTAAAGATCCTGTTCCAAAGCAATAATACAGCTGATCAAAACATAACCAAGAAAGTGCTTGATTTATTAATGACCCAAATGTCATGGACCAAGTATGTTAGACtgtactgtacaaaaaaaaaaaggtccatgCCAGCAGATTCAGTGttgtacagtatattttttgtttcactgTACATTGTATGTTTCAATCTTTGCAGAAGAACTCAACCAGAGCTTAACATGTTAAGAAAATGACTTTTCTTAGCatattaatagtatattttGACAACCGTTGTGCTTGGGGGAAAGAGAAAGGTTATATGGATTAcatctattatatatttttgtaccaaaatgataatttattGGGTTTGTCAGGTTAAAAGGGAAAGTCCCTCTTTGTAAATTCTGAAATTGAGAAGctttaaaaatagaaactgtTGCAAAACGCTACGTTTTTAGGCTCGGCTGACCAAAAgggaacttttattttaataaaatgggGCCCAtgtgtttaaaacacacaaaaacatcaccATCTGGTAGAATATACAGGATAAGAAGTGTTCATTTCTATTCACTTCTGTGGCACTTTTAGCGTCTTTATGTAGTGTATGCACTATGTATCTTTTATTGTAGATTTATTTCTGCATGTTCTGTACACTGGCAGGACGACCAGTACTTGTCTGAAAGAGACCTTTCTCTAActgaaatgttgaaaaaattGTATACGTAGAAACTGCAAGAAAACCAGACCATCCTGTTTCAGCATGCTTTCTTTTTGTAAGCAACAATCTGGACTTGTTTTGTATTACGTggcataatgatattttaatggaCAACGGCACTGATGGTGCTGCAGTATCATTTAAATAAGCACTGTGTACTTTATTCCCCAAGTTCATTCCTTACTGCAGTGCTTTGTGCGGCACTGCACTGTTGCTTCGCCTGAGCGGGGCCACCAGTATCATACATTAAGTATAAATAGGCCTCTACTACTTGAagtattatgtttaataaaatggtCAAGAGATCAATCCTCAGACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128342 lncRNA upstream 20762 8875115 ~ 8875455 (+) True G86758
TU128340 lncRNA upstream 22672 8873327 ~ 8873545 (+) True G86756
TU128273 lncRNA upstream 210100 8682389 ~ 8686117 (+) True G86713
TU128123 lncRNA upstream 551249 8344669 ~ 8344968 (+) True G86593
TU128088 lncRNA upstream 604155 8291843 ~ 8292062 (+) True G86577
TU128592 lncRNA downstream 355237 9298270 ~ 9298849 (+) False pkd1b
TU128622 lncRNA downstream 538552 9481585 ~ 9485156 (+) False G86943
TU128623 lncRNA downstream 538552 9481585 ~ 9487179 (+) True G86943
TU128656 lncRNA downstream 653260 9596293 ~ 9600682 (+) True G86959
TU128658 lncRNA downstream 653260 9596293 ~ 9600682 (+) False G86959
XM_043254354.1 mRNA upstream 536 8891105 ~ 8895681 (+) True st6galnac1.2
XM_043253355.1 mRNA upstream 6011 8884780 ~ 8890206 (+) True st6galnac1.1
XM_043253378.1 mRNA upstream 11583 8879370 ~ 8884634 (+) True LOC122355280
XM_043253330.1 mRNA upstream 26427 8863320 ~ 8869790 (+) True calcoco2
XM_043253368.1 mRNA upstream 33797 8856333 ~ 8862420 (+) True stx4
XM_043253365.1 mRNA downstream 175896 9118929 ~ 9241492 (+) True ca10a
XM_043253389.1 mRNA downstream 338158 9281191 ~ 9283080 (+) True mrpl27
XM_043253287.1 mRNA downstream 342630 9285663 ~ 9306831 (+) True pkd1b
XM_043253359.1 mRNA downstream 555543 9498576 ~ 9521662 (+) True wnt3
XM_043253309.1 mRNA downstream 616647 9559680 ~ 9575720 (+) False hdlbpb
XR_006252198.1 other upstream 43768 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 190886 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1052134 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 1587988 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 1591369 7303138 ~ 7304848 (+) False G86142
TU128728 other downstream 814240 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 928631 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 1538582 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 1544587 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 1599196 10542229 ~ 10581755 (+) False svila

Expression Profile