RNA id: XM_043253312.1


Basic Information

Item Value
RNA id XM_043253312.1
length 4994
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC122355243
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9713064 ~ 9734340 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCTAGCGCCCGCTGATGGTGACTGGCCCGAAACACCTCAGTTTGCGTCACAGAGTTCAGACGAACAGACTAGCATCGGCCATCTTacttcctcaaaaaaaaaaaaaaacttcagtcccaaagaaaaacagaatcCCTGGATACATGGGTGACCACATCAAGGACAGTTATGGAGCATTAAACCAAGGGGCGACGACAAGCAAGCTAGACACAGCTCTAGGGAACAGGAAACTGAAGTGAGGAGCTTCCTGTGACCATATCGTCCGCTGATCCCCAGCGAAACCCTTGACTCCTCGCTGAGGAGACATGGAGGAGCAGGGGGATGCTGGGATTGGGGGTTTGTTGGCGTCCAGCCCGCAGAGTGAGGCTGTAACCCATGAGATGGGCGAACTGTCCCTGCACCCCAGCCAGAGGCTGCCCCCCCTCAACGAACGCAAAAATGTTCTCCAGCTGAGGCTACAGCAGAGACGTACCCGCGAGCAGCTCGTTGATCAGGGAATCATGCCACCCCTGAAGAGCCCTGCGGCGTTCCATGAACAGATCCGCAGCCTTGAGAGAGCCAGGACTGAAAATTTCCTAAAGCACAAAATACGCAGCCGCCCAGAAAGGGCTGAGTTGGTCCGCATGCACATCTTACAAGAGACGGTGGCAGAGCCTTCTCTGCAGGCCACTCAGCTGAAATTGAAGAGAGCTCGATTGGCTGATGACCTGAATGAGAAGATTGCTCAACGCCCTGGCCCCATGGAGCTGGTGGAGAAGAACATCCTGCCTGTGGACTCCAGCGTCAAGGAAGCCATCATTGATGGTCAGATGCAGTACCCTAGAATTCTAGAGGAACCAGCCGATGAAGACAGTGGAGATGCGTTTTCACCTGAGCAGCCAGCCAGTCAGGAGTCCCAGGGTTCTGCAGCTTCTCCTGGGGAGGTCCGGGCCATTGAAGAGTCCTCACCATTGCCTAACAACTTCTTAAAGCACTTTCCTGCAGTGACCACCACCACAACAGATTTCCTCAAGCCTTTTTCCACCAATGAGCAATTAATTAGTCCTCCAGCACCCATGCCACAGCTAATCACCGTGGCCCCTGTGAAGTCTGGACCCACCCTTGTAAAGCAAAGTCAGCCTAAGTTACCTGGGGACAAGAGCCGCAGCAAGAAGAGTAAGGAGGCCAAGCCACGTgtgaaaaagttaaaatatcatCAGTACATTCCCCCAGACCAGAAACAAGAACTCAACCAAGCTCCGATGGACTCCTCATATGCTCGTTTACTACAACAACAGCAGCTATTTTTGCAGCTACAGATCCTGAgccaacaacaacagcagcactACAACTACCAGACAATCCTTCCTGCACCTCTCAAGCCTGTAATTGAAGGCCAAAACAGTGGTGCCACAGTGGCTATCAACAGCACTAGCAGCCTTCCTGCGTCCATTGTGGTGTCTCTGCCCACAGCGACACCTGTGCGGCCCAACAGCACCCTTTCCAACCGCAAGGCAGGCATACTACCTGCCAACCTAGAGGAGATGAAgGTGGCAGAGCTGAAAATGGAGTTAAAGTTACGTGGTCTTCCGGTGTCTGGAACAAAAACAGACCTAATTGAACGGCTTAAGCCTTTCCAAGAAAACACTGCACCCAGCTGCACAGGACCTAACACACAGTCCTGCAGCACACCTATGGAGGTGTCCAGCACCACTACAACCCTATCCCCCATCCAGCAGCCCTCTGAAAATCTAAGCTCCACTCCACCTGTGTCTCCTGGTTCTTCAGAGCTTCACAGCAAAGAAGAAGCATACATGGAGGGACAGGCAGAGGGCCAAAACCGAAGTTTAGTGACGGCAGCTCCTGTTCCTGAGGAACAAGACCGGAGACTACACGAAAAGGAGCGACAGATTGAGGAACTGCTGCGTAAATTGGAGCAGGAGCAGAAGCTGGTGGAGGAACTGAAGATGCAGCTAGAGGTGGAAAAAAGGTGTGGACAGGTTCCACCTGCAGAAAATAACAACGCTTCCAGTCCAGCCACTATGTTGACGTctgtcaaaacagaaaacactgtcCCTCCTAACTGCACACTGAGTCCACACACTACGCCAACGCTATTGAAGCTCGAAGAGGCTCATCCCAACCAGGTGACAGCAACTCCTCTCCGTCAGTTCATTATCAGCCACCAGGGAGTCCCACAGGTCATAGGACAGCCCCAGACTCTTCTAACCACTTCTCATGGGGGTACTCAGATCCTTCTTCCAATGCCCCTGGCAAATAATACCACTACCATCCAACTGCCCAACACTAATGTCAAACTACAGCAAGTTTTGCAGGCTGTCTCTCCATCAGTGCCAGGTATAATTCAGAACCCCCAAATACAGCCCACCAAAGCAGAGAGTCCTGCGTCACAACAGCTGCTCAGTCATAACCACATAGTTCAGACCCTGCCTGTGGGCGCCACAGAGAGGTCAGGCTTCCAGCACGTCACCAATGAGACCCCAGCAGGCCTGGAGATACCTCAGTGCTTCCTCAGCAACTCCCCAGATAACAGGATCTCACCTCAGACGTCCCCCATCCCATCATCCCTTATCAATGGGCCGCTAAACAAAACATCCTTCATTCAGCAGCCCCCAGTTTTCAACCAGACACCCAAGAACAGAGAGCCGCCTCGTTATGAGGAGGCCGTCAAACAGACACGCAGCCTACAGAATGCTGCTGTCTCAGAGATTCCCACAGCAACAAGTCAACAGATGGATGATctctttgacattttaatagaaAGTGGAGAGATCACTCCCTTTAGTCAACAGGACCCGTCTGTGCCTAGGATGATGCCTGTCACGGCCAGCATCACCACCCTGCCTATCAACACCGTCCTGTCCCGTCCACCCGCCCAGGTGCAGATGGCACCCCCGCCGGCGCTCATGGTGTCGCCCATGCCCAGCCTGGCCTCCCTGGACTCCGACAACCAGTTGGAGGCCCTGCTGGAGGGCACGCTGGTTGGGGACACCGAGCCGGAGCATAGGACTTTGGGCCTGCTGGAGGAGCTTCAAAACCAGATACTGGAGCAGCCAAACTCCCCAATGGACACTTCGGAGCTGAGCTTCACCGACCCGCCACCTTCCTCTTCCGCCCTGCCCTTTAGTCTCCAAGACACCGGCCTGGACAACATGGAGTGGCTGGACATCACTATGCCTGGGCCCATCGGCGGACTCAATCCATTGGGCATCACCTCTGAATTCCTGGACGCTCATGATCTGCAGCTGCACTGGGACTGACAGGAAACGCTTCAAACACGGTTATGCTTTCACTCGCACAACAAGCCGTCTGTCTCGGGGTCTGTGTGGCAGCGGTTCACGTCTGGCAGCTTTATGTGACTAGACTCCAGCTCAGCTGTACACTTCACTTACGCTGGTTCTAATCACCATCTGTTCTCATTCACCTTTTGATCAGAAAAGACACATGAGCCTTGTGGGTAATGCTAGCTAGGGCTCTCTTTGCTGTGCCATTCTGAGAGGGAGCTGCTTTCGGGCAGATTGAATTCTGCTGTATTgctattttgtttagtttttttcattcacGTGCCATTGACTTCAGATCGGTTCCAGTCAGGCTGTAAATATCCTCACAGCTAGTTTTAAGGAAGAGCTGTCGTTCCAAATGATGTGGCATCGCAGTAGAGTTCACTTTGTTTGctcaaaattgaaaattgagCCTTGAGCAATGACGCCGTTAGCGCTCCTGTCCGTGATCATGAGTGTCTGTGTCGAGGATGAGAATGTCAGACTCAACGTAGCAGTCAAGTGATGTTTCCCAGAATCCTCTTTTTCAGCACTGACTGCAGTAACAGCCTGGTGTCTGCAAGACTCAGTGGCAAgtgcactaccattcaaaagttttcacattGAGCGTAGTTTGGCAAAGATGGAATTATTCAATCAAAAGTGActtatataatgttacaaaagatggTTATATGTTTCTACTcatgctaaaatataatatacatgctaaattgccataaaaatattaagcagcacatttgtgaatgatcatgtgacactgaacgGCTGCTGGAagttcagcttttattttaaaatatattaaaattgaaaacggCTATTTTATATTGCAGAAatgtttcacagtttttatgttttactatatttttcaattacataaatatagcCTAGTGAGCACTTTCAAAAAGAAACTTAAATGGTTGTATAGTTCGATGAAGATCTAATTAACATATCCAATTTTTAGCAAATCTGCCTTTTTATGATATTGTTTGACTGGCTGTTGACCAGAAATATTGAGTTGTGTTTTATAAAGCGGCTACAATTGCAAATGTCCCGTAAACGTAGACGTCCAAGGTTGCAAAGAGCTTTTGGTCTGATTTGTATCTGGGAATTGCAGACATAGGctatactgtttgttttttggtccTGGAAACAGAAATTTTGTCATCAATCAGCTCTCAATTTCAGACACAAAGCATCCCATTTTGATCAACGGGAGATCAGTTCGTCTATACCATTTGGAAACGATCTAAAATGAATCTATAAAAAGATGTAAATAATCTACGAGGACAAATTTTTGtataaagaaaagcaaaaagaaaaactattttgtctGACTCGTTGGATGTGCGACCccttgtttttgtgtatgtgaaTCGTGAatcagtgtgtctgtgtgtgattgTTCGTCGCTTCAGTGGAATGTTGTGTTTGATTTTCGGTGCATCATACTGTAAGAAAgttccagttttttttcccacatatTTATCAGTTCGGTTCACGCAGTGGGTGCTATATTTCAAgttctcatttgcatatttttgatgctatcggaaaaaaaaaaaactgtcaagaGACCCTGCTTTTAGAAAGAGATTATGTAAATGAAGCCATCTGAAGTTACAGCTGACACTAAATAGTGATCTTAATCAACACAGGGCAACTGTTTATTCCTCCAGTAAATGGagttgaaaaatgcaaaaaaaaa

Function

GO: NA

KEGG:

id description
K22525 MKL; MKL/myocardin-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128768 lncRNA downstream 77947 9632044 ~ 9635117 (-) True G87034
TU128749 lncRNA downstream 138539 9573634 ~ 9574525 (-) True G87019
TU128629 lncRNA downstream 223774 9481630 ~ 9489290 (-) True ormdl3
TU128616 lncRNA downstream 399366 9311671 ~ 9313698 (-) False thrab
TU128795 lncRNA upstream 28762 9763102 ~ 9767238 (-) True G87055
TU128838 lncRNA upstream 185847 9920187 ~ 9939849 (-) False thrab
TU128874 lncRNA upstream 626537 10360877 ~ 10361414 (-) True G87104
TU128879 lncRNA upstream 674999 10409339 ~ 10444778 (-) False LOC122355705
XR_006252238.1 lncRNA upstream 677991 10412331 ~ 10444775 (-) True LOC122355705
XM_043253343.1 mRNA downstream 41784 9662758 ~ 9671280 (-) True zcchc4
XM_043253298.1 mRNA downstream 97523 9601511 ~ 9615541 (-) True zbtb4
XM_043253356.1 mRNA downstream 112392 9596295 ~ 9600672 (-) True shbg
XM_043253297.1 mRNA downstream 118133 9576232 ~ 9594931 (-) True neurl4
XM_043253314.1 mRNA downstream 154158 9545267 ~ 9558906 (-) True arhgef15b
XM_043253392.1 mRNA upstream 197 9734537 ~ 9740528 (-) True LOC122355289
XM_043253367.1 mRNA upstream 9052 9743392 ~ 9756047 (-) False LOC122355272
XM_043253366.1 mRNA upstream 9052 9743392 ~ 9756047 (-) True LOC122355272
XM_043253390.1 mRNA upstream 53685 9788025 ~ 9805510 (-) True LOC122355287
XM_043254356.1 mRNA upstream 404098 10138438 ~ 10144729 (-) True LOC122355804
XR_006252200.1 other downstream 223752 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 223752 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 223774 9481559 ~ 9489290 (-) False ormdl3
TU128627 other downstream 223774 9481630 ~ 9489290 (-) False ormdl3
TU128530 other downstream 834952 8875617 ~ 8878112 (-) True LOC122355288
TU129388 other upstream 1308548 11042888 ~ 11045882 (-) True LOC122355648
TU129464 other upstream 1587083 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 2098539 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 2214931 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 2915043 12649383 ~ 12675472 (-) False prr15lb

Expression Profile