RNA id: XM_043253316.1


Basic Information

Item Value
RNA id XM_043253316.1
length 3436
RNA type mRNA
GC content 0.46
exon number 22
gene id nsfb
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9524286 ~ 9543828 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tggtggaTTTTCGCTTCCGGTTGTCAGCGGAGAGCAGTATGGTCGCTAGGGGCAGCGTCTAGTCAGGATTGGGTTGCGCTTGCGGAATTTATCTTGATCACCTGATAAACGCAGAAATGGCTGTCCGGCTAATGCAAGTAGCGAGATGCCCGACAGATGAACTGTCTCTCACAAACTGTGTGGTTGCAAGTGAGAAGGACTTCAAATCTGGGCAacaTTTGACAATTAAACCCACGGCGTCATCCTTTCAGAAGTTTGTGTTCACGGTGAAAACCCACCCAGGCGTGTTGCCAGGAACAATTGCTTTCAGTCTACCTCAGAGGAAATGGGCCGGGCTCTCTCTAAACCAGGATGTGGAAGTGAGTCTCTACAACTTTGACCCGTCAAAACAGTACGTGGGAATCATGACGATAGAGATCGACTTCCTCCAGAAGAAGACCGCTGACAGCAACCCATACGACTCTGATAAAATAGGAATTGAGTTTATCCAGTTTTTTACCACACAGGCCTTCAGCAAGGGCCAGAATTTTGTCTTCAGCTACTGCGATAAGCTTTTTGCAATGCTCATAAAAGATATCGAGGCCATGAATACCAGCATCCTTAGCGGCGAGCAaggttttaacaaaaaaaagATTGAGATTGGTCTGTTGCACGGCAACAGTCAGGTGATTTTTGAGAAAGCAGAGAGCTCATCTCTCAATTTGACTGGAAAATCACAGACCAAAAGTTCTCTGCAGTCCATCATTAACCCTGACTGGAACTTTGAGCGAATGGGCATCGGAGGCCTGGACAAGGAGTTCTCGGACATCTTCCGTCGGGCCTTCGCCTCACGAGTCTTTCCTCCAGACATAGTGGAGCAAATGGGCTGTAAACACGTGAAGGGGATCTTGCTGTTTGGGCCGCCCGGCTGTGGTAAAACCCTCATGGCACGCCAGATTGGTAAGATGCTGAATGCCAGAGAGCCGAAGGTGGTCAACGGGCCAGAGATTCTGAACAAATATGTGGGCGAGTCAGAGGCCAACATCAGAAAGCTGTTTGCTGACGCCGAGGATGAACAGAAGAGGtTGGGGGTCAACAGTGGACTGCACATcatcatttttgatgaaattgatGCCATCTGTAAACAACGTGGCAGTATGGCAGGCAGCACTGGGGTCCACGACACTGTAGTCAACCAGCTACTGTCTAAGATCGATGGCGTAGAGCAGCTGAACAACATCCTGGTCATTGgaatgaCCAACAGGCTTGACCTGATCGTCGAAGCCCTCTTGAGGCCGGGCAGACTGGAGGTCAAAATGGAGATTGGCTTACCTGACGAGAACGGCCGCATTCAGATCCTGAATATCCACACTGCAAAAATGAGGCAGTCTAACATGCTGGCCAAAGATGTTGAAATAAAGGAGCTTGCTTTTGAGACCAAGAACTACAGTGGAGCAGAGCTGGAAGGGCTTGTTCGAGCTGCCCAGTCAACTGCCATGAACCGTCACATCAAGGCCACTACTCAGGTGGAGGTGGACATAGAGAAGGCTCAAATGCTGCAAGTGAGCAGGAGTGACTTCTTGGCCTCTCTGAATAATGACATAAAGCCCGCTTTTGGCACGAATCAGGAGGATTACTCAAGTTACATCATGAACGGTATTGTGAAATGGAGCAATAGTGTTTCTGACGTACTAGGAGATGGAGACCTTTTGGTGCAACAGACCAAGAATAGTGAACGCACACCGCTAGTAACTGTGCTTTTAGAAGGGCCTCCTCACAGTGGTAAGACCGCACTGGCGGCCAAGATCGCAGAGGACTCCCAGTTCCCCTTCATCAAGATCTGCTCTCCAGACAAAATGATCGGCTTTACTGAGACCGCCAAATGTCAGGCCATCAAGAAGATATTCGATGACGCCTACAAGTCCCAACTGAGCTGTGTGGTGATGGACGATATAGAAAGACTTCTGGATTTTGTTCCCATCGGGCCACGGTTCTCTAACCTGGTGTTGCAGGCTCTGCTGGTGTTATTAAAGAAACCTCCTCCTCCGGGTCGTAAGTTGCTGATTCTTGGCACAACTAGCCGGAAGGATGTTCTGCAGGAGATGGGCATGTTGGACTCTTTCAGCACTACAATTCACATCCCTAACATCTCTAGAGGAGATCATCTCATGAAGGCCCTGGAGCTTCTCGGGGGCTTTCAGGAAAAAGAGGCAGCAACTATTGCAGAACAGGTGAAAGGAGAAACGGTGTGGCTCGGCATCAAGAAGCTGCAGATGCTCATCGAGATGTCAATGCAGatgCCTTTCGAATACAGAGTTAACAAGTTCTTGGCACTACTGAGAGAAGAAGGAGCGTTGACCTCTGACAAACATGCGGTCATGTAGTCTCTGGTGCAGGGGAAGTATCCTGACAAACCAAGGCTATTTTGAAGCTGAGTCAGGAAAACAGTGCACTTGAGAGAaagtctgagagagagagagactaataCTTTCCTTAAGTACAGTGTATGGCATGTTTCCATGGCAAATGTAGACACATTAGCTCTCCTTGATTCCTCTGCAAAGGGTCTCATATTTGTACAGTGCCTCAGGTGTCTTATGACATCAGGAATTTTTAAATAGtccatgcatgtatataaagaCCTATACtgtggtttttatatatatataaatctcatACTTGTGTGTATTTACTGAGACGAACCATTCCTGATGCCTTACTTTTCCCTAAAATTGTCCTTACTGGGCTGTGTAAATTTAGCCAAGGTTAAATTCTTTGACCAAATCCTCTGCTCGTTTTCTCTTTGCCTTGTATGCACTTATTATCAACAGTTAGTGCCTGCCAAAAACAATATTGAAATGCTCACTCCTGTGCCTTTGCATGCCAGTATATTGTTCCAGtttgtttattgcttttattgttttctgactagaaaaatatttttgttttttaaaagggaACTATCCGTCCTTGTTATATCGCTCGGGACATTCCATGTCAGGAACATAGGAAAGGTCTTTGTCTCAGCGTCTCACCCCAGTCACACGGGTAACGTAGTGGCCTTAAGCATTGTGTACAGGATGGAAACCCGCAACCTACCTCCCCTCTGCCAAAAGTGCCAGGATAGTTCACATTGGCCTTGAtttctcctcttctttctctttatatctcTGCCAGAGCATTATGACTCCTTTATGACTTTTACCGTTGAACTGTGAAAGTCGTAGTATTTGAACCGCATTTAAATATGGAATTTAAGGTTTGTGTACATATTGGGTCTTGGACTGCATGTCACGCACTATAAATATAgctataaatgctgtttttgtgacaTGACTCCTAAAAGAATTAATCACTGCAATAATAATCTTTCGTATTATATAGAAAATGCCTTCAATGATTCACTGATTAAAAATTCGGTTTTAAGATTGCAATAAATGACTGCTGTTTTTGTGAA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K06027 NSF, SEC18; vesicle-fusing ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128629 lncRNA downstream 34996 9481630 ~ 9489290 (-) True ormdl3
TU128616 lncRNA downstream 210588 9311671 ~ 9313698 (-) False thrab
TU128617 lncRNA downstream 210758 9311701 ~ 9313528 (-) False thrab
TU128593 lncRNA downstream 224387 9299679 ~ 9299899 (-) True G86916
TU128523 lncRNA downstream 655224 8867892 ~ 8869062 (-) True G86861
TU128749 lncRNA upstream 29806 9573634 ~ 9574525 (-) True G87019
TU128768 lncRNA upstream 88216 9632044 ~ 9635117 (-) True G87034
TU128795 lncRNA upstream 219274 9763102 ~ 9767238 (-) True G87055
TU128838 lncRNA upstream 376359 9920187 ~ 9939849 (-) False thrab
TU128874 lncRNA upstream 817049 10360877 ~ 10361414 (-) True G87104
XM_043253387.1 mRNA downstream 34974 9484939 ~ 9489312 (-) False ormdl3
XM_043253385.1 mRNA downstream 34975 9481559 ~ 9489311 (-) False ormdl3
XM_043253384.1 mRNA downstream 34975 9481559 ~ 9489311 (-) False ormdl3
XM_043253383.1 mRNA downstream 34976 9481559 ~ 9489310 (-) False ormdl3
XM_043253386.1 mRNA downstream 35266 9481559 ~ 9489020 (-) False ormdl3
XM_043253314.1 mRNA upstream 1439 9545267 ~ 9558906 (-) True arhgef15b
XM_043253315.1 mRNA upstream 1439 9545267 ~ 9557693 (-) False arhgef15b
XM_043253297.1 mRNA upstream 32404 9576232 ~ 9594931 (-) True neurl4
XM_043253356.1 mRNA upstream 52467 9596295 ~ 9600672 (-) True shbg
XM_043253298.1 mRNA upstream 57683 9601511 ~ 9615541 (-) True zbtb4
XR_006252200.1 other downstream 34974 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 34974 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 34996 9481559 ~ 9489290 (-) False ormdl3
TU128627 other downstream 34996 9481630 ~ 9489290 (-) False ormdl3
TU128530 other downstream 646174 8875617 ~ 8878112 (-) True LOC122355288
TU129388 other upstream 1499060 11042888 ~ 11045882 (-) True LOC122355648
TU129464 other upstream 1777595 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 2289051 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 2405443 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 3105555 12649383 ~ 12675472 (-) False prr15lb

Expression Profile