RNA id: XM_043253320.1


Basic Information

Item Value
RNA id XM_043253320.1
length 2743
RNA type mRNA
GC content 0.46
exon number 19
gene id rgs9b
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8809082 ~ 8821062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGTTTACCTACACGAGCAGAGCCGTTACCTGATTGGCGCGCACACAGCCATCGTCTTTGTGTGCATCAGTAATGATTATAGATTAGACACAGCCGAAACGATAGTACGATTACCTACCGAGTATCTCCCATTTCATTCTCTCGTCTTCGACCGTCGACGGACTGTGGCTTGAAGAAGCGAACATGACCATAAGAAATGTACGGGACCACGGGCAGCGATACAGACCGCGTATGGCATGCCTGAAGAAGGTGGAGAATGTGGTGTTGGAGATGCAGGACCCCAAAACTGGAGTGAAATCTCAGACCCAGAGGCTTGTAATCACCACCATCCCACATGCTATAACAGGGGAAGATATTGTTGCATGGATCGTTAATCGATTCAAAATAGATGCTACAGAGGCCCGAGCTATGGGGACCATGATGGTAGCGTTTGGGTACATCTATCCATTACAAGATCATAAGAGACTTATCCTTAAACCAGACACATCCCTGTACCGCTTTCAGACCCCATATTTTTGGCCCGCGCAGCAGTGGCCGGTGGAAGACACAGACTATGCAATTTACCTGGCAAAGAGAAATATACGCAAGAAAGGGATGTTGGAGCTGTATGAACAGGAACAGTACAACAATCTTTACAAATGGATGAATCACAAGTGGGATTTTATTGTAATGCAGGCCAAAGAGCAGTACAGGGCGGGTAAGGAGAGGAAGAAGCCAGACCGGGTGGTCTTTGACTGTCAGGAACGGGCCTACTGGGTTGTACATCGGCCACCGCCGGGAACAGTTAGTGCCATGGACTATGGACACGACAGGATGGTGGACCCCAATATTGAGGAGaaaaaaacatctgactACTTCAGAAGAATTATTATGTTCACTCAGCAGTGTATCATGAGACCAAGGGTGAAGTCGTCGGTGTCAATTGGAGCACTTGTTAAGTACACAACAACATACAAAGAGCATGACCCTTTTCTCCACGCCTGCCTCCCAAGCAACCCCTGGTTAACAGATGATGTTACATATTGGACCCTCAACATGCCAAATGTTGAGACCTCTACTAAAATGAGGGTGGAGCGCTGGACTTTCAGCTTTGGAGAACTGCTTATGGACCCTCGGGGAAGGGCAGATTTCCGCCTTTTCCTTAAAAAAGAGTTCAGTGGTGAGAATCTTGCCTTCTGGGAGGCATGTGAGGATTTGAAATGGGGTGCTGCAGAGACAATGAAAGAAAAGGCCCAGCAAATATATAAGACCTTTTTGGCCCGTGGAGCTCCACGTTGGATCAACATTGATGGCAAAACAATGGACATAACAGTGAAGGGTCTGGCACATCCTCATCGTTATGTACTGGATGCTGCCCAGACTCACATTTACATGCTCATGAAAAAGGACTCATACGGGCGATATCTCAAGTCCCCAGTCTTTAAGGAGACTCAAAAGAAGGCCATTGCTCCTGAACCACACCGATTCACTGAAACGCAGTTGGAGCAGAATGCCAAGAGAAGGCGGCCCAGCCTGAGTCCCATCATCCTCAGACAGCAGGAGGAAGAACAGAAGGCCAAACTAGCAGCGAGTGGCCCGGTGGACATCACACAGCTCTGCCGGTTCACAGCACCTGTGCCTCACCTAGCCGTGTATACAGGTATTTGTGAAGCGCAGTCCACCGCTTCCCCTGGGCTCATGACACTGCCCAACAGCGCTGCCTGCCCGTCTCCCATCAGCGTCGCCATCGACAGCACTCCAGCCTCAGAAAGGAGGTTTGACGGTAACGGAGGGCCTTCCTCCTCCCATTTCCCATCAATTGCAGAGGCATCAGTATCAGAGGAAGAGAACCAGCCACCTGCCACAAAGTCTCGTGTGGCTCTGTCGCTGAGCAGACTCCTCCGCAGAGGATGCAATGCCCCATCTGTCTTCGCCAGTCTGTCCCCAAAATGTGCTGTGGCATCCGGAGGAGGCAAAGTACAGCCGCTCGGAGTGGAGCCGCTTGCTCAACCTCAGCCCAGAAGAATCGCAAAtttttttcaaatcaaagttGACATCCCACCCGAGTGCCGCATCTACCCCATTGATTCagaagatgaggaggatgaCAGTCCTGATACAGCAAGAGGAGGCGTGAAAGAAATCATTTGTCCGTGGGAAACTGTCACCAAGCAAGATGGAGCTGGATAGAAGAGTCATAGACGAGTCAGAAGAGAGGAAGGAAATACACTGAACCAATACTTGTGTCATAAATATTCTGTCTTACAACCCGAGAAGGCTGTGGTAGTAATGTATGAAGTAACCTCATCTCTAATTGACCTGTCTGTTATTTTTGATAGCTATTAGGTAGTGCCTACATGTTATTGTAGCCAATGATCTGGttataatatgtttaaatgttggttttatatacacaaattcGTATTCTGATGTCACTGTACTTTTATGACTGAAGGGGCCTTattttaagagatttttttttgtttatcatcaGTTTGTTTAGTGGTGCGGACAAAAGATTTTGTACTTGGCTCGTTCACTGTTTTATATAGCtgcaaaacatgcataaatgtgAATTGctttaagaaatgttattttcataGAAGTAAATCTAGTAAGGCAGTGAAAAGGAATGTGGATACACATTTGCTGTCTGAATGTAtaacctttaaaatgtttacagttcACTTCAGAATGTGAATTTGTTCATGACTCATGTTTAAATTGTGTAAGTGCCTCAATAAATCATTCAAGTTAATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128455 lncRNA downstream 62005 8675646 ~ 8747077 (-) True G86825
TU128456 lncRNA downstream 62005 8675646 ~ 8747077 (-) False G86825
TU128458 lncRNA downstream 64437 8680105 ~ 8744645 (-) True G86826
TU128431 lncRNA downstream 178875 8627094 ~ 8630207 (-) True G86809
TU128416 lncRNA downstream 180110 8597394 ~ 8628972 (-) True G86798
TU128502 lncRNA upstream 819 8821880 ~ 8823436 (-) True G86848
TU128508 lncRNA upstream 17290 8838351 ~ 8838612 (-) True G86852
TU128509 lncRNA upstream 19753 8840814 ~ 8841155 (-) True G86853
TU128510 lncRNA upstream 22326 8843387 ~ 8843774 (-) True G86854
TU128514 lncRNA upstream 31884 8852945 ~ 8853257 (-) True G86856
XM_043253311.1 mRNA downstream 442 8781679 ~ 8808640 (-) True mrtfab
XM_043253322.1 mRNA downstream 65476 8738942 ~ 8743606 (-) True xrcc6
XM_043253370.1 mRNA downstream 70834 8733817 ~ 8738248 (-) False josd1
XM_043253371.1 mRNA downstream 70839 8733817 ~ 8738243 (-) True josd1
XM_043253374.1 mRNA downstream 76093 8728809 ~ 8732989 (-) False cbx7b
XM_043253341.1 mRNA upstream 11021 8832082 ~ 8837257 (-) True LOC122355256
XM_043253342.1 mRNA upstream 11021 8832082 ~ 8837220 (-) False LOC122355256
XM_043253323.1 mRNA upstream 24050 8845111 ~ 8850597 (-) False snx11
XM_043253325.1 mRNA upstream 24053 8845114 ~ 8852234 (-) False snx11
XM_043253324.1 mRNA upstream 24054 8845115 ~ 8852234 (-) True snx11
unassigned_transcript_1920 other downstream 121512 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 121534 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 196637 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 289973 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 290717 8518235 ~ 8518365 (-) True LOC122355888
TU128530 other upstream 54556 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 660498 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 660569 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 663885 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 663885 9484946 ~ 9489312 (-) False ormdl3

Expression Profile