RNA id: XM_043253323.1


Basic Information

Item Value
RNA id XM_043253323.1
length 3726
RNA type mRNA
GC content 0.39
exon number 7
gene id snx11
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8845111 ~ 8852234 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttttagTTGTTCTTTTGAGTAAAAAGTGCCGTGACAGACAGCAGACGACGAGTTATCGAACTAAAAGCTACACTAACACTAACGCCGAGGTATCCCTCTTCATAGGATTGCTAAAAGTACGTCCAGTTTCAATTCATTTTACTCCGTAGTCATGATTAATGGCCGTttagaggaagaggaggggcGGGTGATTCATCACAAGGGTTAAAAGAGCAAGTCAGGAGATATTTGTTCCCTGGATAGTCAACAATTAGTGATGTTTTGGAGAGTAGATAGTACCAGGTCTGAGGAATCTGTTGATTTCTCCCTTTATGgatttgtgaaaatatttgctttCCTCAAGTTatggaaaaacaaagacagaaaagaCACAATCGTaTGTCCATTGTGTCGTGTTACCTCTGGTAGGATGATCAAAAGTCAAGAGCAAGatgagttCATTGCTGTGAGAGTTCAGGATCCTCGTGTTCAAAATGAAGGGTCGTGGAACTCATATGTGGACTTCAAAATTTTCCTTCATACAAACAGCAAAGCGTTCACTGCCAAAACATCCTGTGTGAGACGGAGATACAGCGAGTTTGTGTGGTTGAAgaaaaaactgcaaaagaaCGCTGGTCTGGTACCTGTTCCTGATCTCCCGAAAAAATCTTTCTTCTCATTTATTAATGATGACTTTATTGAAAGGAGGAGAAAAGGTCTTCAGAGCTTCTTGGATAAAGTGCTGCACATGACAGTATGCCTGTCAGATAGCCAGCTCCATCTTTTCCTTCAGACTCAGCTTCCTGTCAAGCACATCGAGGACTGTGTGCAGGGTCACACCCCTTACACTGTGACAGAAGCCATTCTCACTTATGCTTCCTCTAACCGTGGCTGGGTGCAGGAGGAAGGCGAAGGGGATGGCGGCCAAGAATTATGGCCCACCCCTGTTCCATATGAATCTATAGAGAGCCCTGCTCCTCACCTCCCTTCATTACAAAGTCCAGGAGCCACATCCAGTGGACCTCCAAATGAACAGATAAATGAATGTACAGATGTTTCAGACCATGAGTCGAGGCTGAGTGAAGCAGAACAGACTAGACTTGACTGCACTCAAGAGGGAGAGAGTTACATTAAACTAGTAGTTGAAGTCCACCCAAATCTTGTTGTATCTGTAGAAACCGAGGAAGAGGATGGAAACACTGGCTCAAAAGAAACGCATAAGTTTGACGAAGACGCCAAATATCTACAAAGCACTGATTGTGAATATGTAGCTCCACAGATAGACAGACTGATTGAAGACAAACTTCAGCAAGGAGATACACACAATGAAGAAGATCTTGATCAAGAAACTCATGTTGCTGAGGTTACATCAGTGGACAAAGTCTTTGAGAAGAAGACTCTTGATGATATCAATAATGCGAAGAAGGGAAGTCAGGAATTTGGACTTGAACAGGATAGCACTGTGAGACAAACCCCCGACAAGGTCCTTCATGAGGAAGATCCAGGAGTGAGGATCCATCAAAATGAAGTAACTGTTGATCTCAGTGTTGATGCTGAGAACGTACTTGAAACCGTAGAAGACAACACGCCAAAGACTGAAGATCAAGATAAAGCTGAGATAACAGAGGAACACGTGGTCCAAGAGAACGGATTCGGTGATGAAGATTTTCCTGCCCAGGAAGAGgccatgaatgaaaatgaagtgCATGTTGGGGAAGTGAACAAGCTCAATGCGAAGTGTCTTCAGCCTGACAGTGCCATTTTGATACTTGAGGGAATTGAGGAAGCGGTAAGCACGCAAGCGGCCCCCGTGACAGAGACTGTCAGTAACCTCGGTGACAGTACTGCTGATGTCAACAAGCTTGTTTTACAAGCCATAGAGATGGATTCGATTCAGTGTCACGAGACAGACAGTCTAACTATCATCGCTACCCACCAACCAGATGCTAATTCCCATGAGTCATGAATAGGACAGAGTTATCAAAGTCCTCCTTTCAGCTCTTTCCCAGTCAACATCCAAGATGTTTTTCTACTTTGTGAGTGAGTGCATGTAACTGTTTTCTGCATTGATCCACTGTTGAGTTGTGTTCAGTTACAGACTGTTTACAGAAGATACACTGAATGATTAGACCAGGCTTTAGTTTTTCCCCTACGAACAATGTGAACAAACACAGATAATGCACTAACTAATGTGCCATTCAGGATTGTGAGCAAATTGCACGAGCAACGAAAAGTTATGAATCCATAGTAGCGAGTGTGAAAATGCAGCGTATATCACTACGGCACCCTTATTCTAATATTCACCATtcttaatcaaaatatttctcTTGTTTGTGTAATTTTAGCAGCAGGGATTACCTCATTACATGTCGCTGATCCATTTTAGCAAAACCAGATTTCGACTTTCTAAAggcacttcctttttttttctcccaactGTAAAAACATGTTGCTCTCACATGTTAGCTCTACTTGAACTTTGGGTAATTTTAAGGAATAGTTTGGTCccaatttaaattctgtcaacTTTTCTCACCCCCGTGTTCTTCCATACCCTAATGGGTGTCTTGTGTGGAGCACAGGATGATATTCGGAAAGATGTCTTTTCtgtccagtgttgttttggacccAGCTTAATTTCACTGTATAGTTGAAACATTATTCTAAGtatcttcttttgtattttaataaatgtacaaaaatcacAAGGGTGAGTAAGTGATGACAGGATGTTTAGTGGTAGTGTGGCTGttaagagtaatttttttttttttatacttcagGTCTTTGATATCTAATTTCATTGTTGCTTAATTTATGATCAGAACACTAATTTCTAagtaaaaataacccaaatgcaTAATAACAGTGCGCATTGTTTGGAATAATATACGTTATTTCCCCCGTCATGTTGCACTAGGTCAGGTGAGCTACTCGTGGACCGTACTTCTATATTCTGCTGTGATGATGTTACTCTAGCTGCTTGTAATACTAATATAGGAACAGAAACATGCTCAAAAGGGAATTGTTTGTTGATTGACAGACAAgggtacttttttattttctgagatatgtttatcttttattacgcacagatgttattttttatcCAAATCAGCacagtaataattattagtgCATAGTAGCATTACAAATTCAAAGCATcctaagttatttttttatttgtttttaatggatttaaaaagGGTATAAGAACATCTCAGTCGGCTCCACCTCttaatgtgacattttcatGTTCATTCGAATGAGCCACGTATAGATCTATACTACATCGTACATGGGTGCCAGAGCAGGTGTTTGttactgtatgtatgtttggATTCACCAGTGTGCTTACTAACAGCAATCCAATAAAGAATAAGAGGTTGAAATTAAACTCTGTGTCCGCTGAATTACCTGAAAGAACACACCTTGAGTGTCTTCACTATACCGACCAAcagtgtttggaaatgtaatgggTTACATATTACAAGTGTAGATTACATATTACAtcttattcaaaatgtaataatagtgtaactttttaattacttttaattacctttctaatattttgaactGTTAATCACTGTAAACCAAACTTTCAAAATCATCTTCATCTTATAATTAAGATTGTAATAAGAGATAAAGCTCatctttattttgcaataacaattggctggatgtacattatccctCTATTACATGAGCTTTTTTAAACCCATTACGTGCATGAAGAAGGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128510 lncRNA downstream 1337 8843387 ~ 8843774 (-) True G86854
TU128509 lncRNA downstream 3956 8840814 ~ 8841155 (-) True G86853
TU128508 lncRNA downstream 6499 8838351 ~ 8838612 (-) True G86852
TU128502 lncRNA downstream 21675 8821880 ~ 8823436 (-) True G86848
TU128455 lncRNA downstream 98034 8675646 ~ 8747077 (-) True G86825
TU128514 lncRNA upstream 2348 8852945 ~ 8853257 (-) True G86856
TU128515 lncRNA upstream 4732 8855329 ~ 8855541 (-) True G86857
TU128518 lncRNA upstream 5076 8855673 ~ 8856110 (-) True G86858
TU128525 lncRNA upstream 12844 8863441 ~ 8864263 (-) True G86862
TU128523 lncRNA upstream 17295 8867892 ~ 8869062 (-) True G86861
XM_043253341.1 mRNA downstream 7854 8832082 ~ 8837257 (-) True LOC122355256
XM_043253342.1 mRNA downstream 7891 8832082 ~ 8837220 (-) False LOC122355256
XM_043253321.1 mRNA downstream 24049 8810168 ~ 8821062 (-) True rgs9b
XM_043253320.1 mRNA downstream 24050 8809082 ~ 8821061 (-) False rgs9b
XM_043253311.1 mRNA downstream 36471 8781679 ~ 8808640 (-) True mrtfab
XM_043253372.1 mRNA upstream 19468 8870065 ~ 8872539 (-) True snf8
XM_043253391.1 mRNA upstream 25076 8875673 ~ 8878131 (-) False LOC122355288
XM_043253380.1 mRNA upstream 92514 8943111 ~ 8946818 (-) False nme2a
XM_043253379.1 mRNA upstream 92514 8943111 ~ 8946320 (-) True nme2a
XM_043253326.1 mRNA upstream 423768 9274365 ~ 9281289 (-) True eme1
unassigned_transcript_1920 other downstream 157541 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 157563 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 232666 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 326002 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 326746 8518235 ~ 8518365 (-) True LOC122355888
TU128530 other upstream 25020 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 630962 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 631033 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 634349 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 634349 9484946 ~ 9489312 (-) False ormdl3

Expression Profile