RNA id: XM_043253341.1


Basic Information

Item Value
RNA id XM_043253341.1
length 1673
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC122355256
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8832082 ~ 8837257 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCAACATTGACTGTAAACCAATCCTCAACTTACTCAACAGCTGTAACCTCCCACCATAGAGGAGCACAGAGCTTGAGACAGTGGAAGCAGCACCACATGGACTATAGTACAGCGGTGGAGTAACACATTCCTGGTAAGGTCAAAATGGCACAGGGGATTTTCAGACTAAAAGGTTGCCTTGGCTCTAAAGAGTATTCAGAAGTCCCAGATGGTGGTTGGGGTTGGATTGTGGCTGTGGCCTTTTTTCTGGTGGAGGTGTTCACTTACGGGGTTATCAAAAGTTTTGGGATTTTTCTTAAGGACTTAATGAGTGACTTTGGCGAGAGCAACAGTCGAGTATCTTGGATCATTTCAATATGTGTCTTTGTTATGACTTTTACAGCTCCTTTATCAACAGTGCTAAGTAATCGATTTGGCTTCCAGCCAGTTGTGATGTTTGGAGGATTTCTCATATCTCTGGGTACAATCTCAACAGCATTCACCAGCTCCATCAATCAGATGTACCTCACTATAGGAATTGTGACAGGACTGGGCTACTGTCTGACATTTCTGCCAACCGTCACAATCTTGTCCCAGTACTTCAGCAGGCGTCGTTCTGTGGTCACAGCCATGGCCTCCACTGGAGAGTCATTTGCTATATTTGCTTTTGCTCCAGCCTTCACAGCTCTTAAGAACTTCATTGGCTGGAGGTACACAATGGTGGTGATTGGAACATTACAGGGCATCATTATTATCTGTGGGGCTCTGCTTCGTCCCATAGTCATCAAACCAAAGATATCTCTAACAGATACAGAGCAGAAGATAACATGCTCTCAACCTGAAGAACAAATGCATGGTTCTTCTAGCTCTGGAGATTCAGGTGTACAGTCACTTGATGAGCTGAAACGGGCCATCAAACCAGGGAAGGAACAGAAAGAAGCAAAACCACTTCAGATCCCTCCGAAACAACAGAACATCCCAACCAAAAATAAGCTCCTAGATTTGACTGTACTAAAAGAAGGCAGTTTCTTATGCTATTCCGCGTTTGGCCTTTTTGCAACGCTGGGCTTTTTCGCCCCACAGTTGTATGTGGTGGAGCTCAGTGCCAGTTTGGGTACAGAGAGGAACAAGGCTGCCTATATGCTGTCAACAATGGCCATTGCTGAGATCTTTGGACGTCTCTCCATCGGATGGGTCCTGAACTGGGGGCGTATCAGAAAGATCTTCGTACTTCTTGGATGCGTGTCACTTATGTGCCTGGTGCTGGTGTTTTTTACTGTGGTAAATGGCTTCTGGGGATTGGCAGTGTGCTGTGTGCTTTACGGCTTCTTACTTGGGAACATTGCATCCACACACATTCCAATGTTGGCTGAGGACGATGTCGTAGGGATCCAGAGGATGCCCTTGGCTGTAGGCGTCTACGTCTGTATTCAGAGCTTTGCAGGACTGGCTGGTCCACCATTAGGAGGTGTCCTTGTGGATGTTACACAAAATTACAGGGCTGCATTCTACTCCTGTGCTGTGGGAATGGGACTAGGTGCCGTCTTCCTTGGGCTCGTACGTCCAGCTAATACAGGTCAACTGTGCTTGAGAAGGGACAACGGACAGACTAACACCATGGTGGAGCAAGTGTCCAAAAGCAAACTGGAGGAAACTGTAGAAGTGGATAATCAAGATATTAAGTCTTGACTTC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008028 monocarboxylic acid transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128502 lncRNA downstream 8646 8821880 ~ 8823436 (-) True G86848
TU128455 lncRNA downstream 85005 8675646 ~ 8747077 (-) True G86825
TU128456 lncRNA downstream 85005 8675646 ~ 8747077 (-) False G86825
TU128458 lncRNA downstream 87437 8680105 ~ 8744645 (-) True G86826
TU128431 lncRNA downstream 201875 8627094 ~ 8630207 (-) True G86809
TU128508 lncRNA upstream 1094 8838351 ~ 8838612 (-) True G86852
TU128509 lncRNA upstream 3557 8840814 ~ 8841155 (-) True G86853
TU128510 lncRNA upstream 6130 8843387 ~ 8843774 (-) True G86854
TU128514 lncRNA upstream 15688 8852945 ~ 8853257 (-) True G86856
TU128515 lncRNA upstream 18072 8855329 ~ 8855541 (-) True G86857
XM_043253321.1 mRNA downstream 11020 8810168 ~ 8821062 (-) True rgs9b
XM_043253320.1 mRNA downstream 11021 8809082 ~ 8821061 (-) False rgs9b
XM_043253311.1 mRNA downstream 23442 8781679 ~ 8808640 (-) True mrtfab
XM_043253322.1 mRNA downstream 88476 8738942 ~ 8743606 (-) True xrcc6
XM_043253370.1 mRNA downstream 93834 8733817 ~ 8738248 (-) False josd1
XM_043253323.1 mRNA upstream 7854 8845111 ~ 8850597 (-) False snx11
XM_043253325.1 mRNA upstream 7857 8845114 ~ 8852234 (-) False snx11
XM_043253324.1 mRNA upstream 7858 8845115 ~ 8852234 (-) True snx11
XM_043253372.1 mRNA upstream 32808 8870065 ~ 8872539 (-) True snf8
XM_043253391.1 mRNA upstream 38416 8875673 ~ 8878131 (-) False LOC122355288
unassigned_transcript_1920 other downstream 144512 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 144534 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 219637 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 312973 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 313717 8518235 ~ 8518365 (-) True LOC122355888
TU128530 other upstream 38360 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 644302 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 644373 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 647689 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 647689 9484946 ~ 9489312 (-) False ormdl3

Expression Profile