RNA id: XM_043253345.1


Basic Information

Item Value
RNA id XM_043253345.1
length 2100
RNA type mRNA
GC content 0.43
exon number 7
gene id si:dkey-219e21.4
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9665352 ~ 9669102 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAAAATACACGCAATGCAAGTGTCAACATGCATTTCAGAGGAGCTAAACAAAAACCACTGCTCTTTCCAAACCCTGCAGCAGGTCAACAAGTCTGGAATTGAGCAGACATAATCCTGTCAGCtataaaacattgcaaaattGTGCACACGCATATTCACATGCAGCAGGCTTTGGCTTGTTAAAAGGGGTTACACACCTTTTTTAACACATTCCTCGGATGAACATAGCAGTGCTTGCAGGAAGACGGCGACAACCAAACACATTCATTAATTCTCTTATCCGTCTCTTAGCTCAGAGGACACTTGGAGAGATGGCAGAGGAAGACCTTTGGCCTTTATCAGAGGAAATCAGTTCCTTCTGTCTGGTTACCGAGGCTCGTTCAGGGACACAAGTTACCCAGCCCTTCCCACGCTCTCCAAAACTGATCAGGAGAACCGGAGCCAACTCTCCAAAACCATCAGAACTGCCAGTCTGGTTAGATGACTTaaagaaggagaagaaaagaacaGAGTCTCATCTGGAATCTATAAAAAAGCGGCAAGCAAACCTGAATACAAACTCGGAGGCGATGAAGCAGAAGGTGCAGGAGTGCTTTGAGGAGCTACATATGGCTCTGCAGGAGGATGAGAAGGCCGTTCTGGACATGATAGAGCAAGATCGCCGGGAAACCAGCAGTAGACTAAATCGAATTCTTCAAGACTGGAATCaacacctcagtctcctccagaAACACATCAGCACTATTCAGTCAGCTCAACAGAGCCCAGGAGAATCCATGAAGCAGCCTTTACCTGAGGATTTTACATTGACTAGCTGTCGTAAGAAACTGGACCCAGCTGAAGAGgagataaaaatgaatgaagaaaGGATCCATAAGCTCATGAAGGTTCTTAGGAACATTACCAAAGATCTGAAAGCCCAGCTCCAACGAAAGAACCTGCTTCTGGACTCCTTTGAAGTGGCGATTGACAAACAGACATGTCACAAACAGATCAAGGTGACCTCAGAAGGACGGGGCCTGTGCCTTTCCTCAGAGGACCGCTGTGTTTCCAATGAACCTCTAAGGTTTGATCAATTATACTGCGCCTTGGGCTCTGCTGCCGTTACATCTGGGCAGCACTACTGGGAGGTAGATGTGCACTGCTGTTCATCGTGGGCTGTGGGCGTGGCTTATGGCAGCCTACAGAGGAGAGGCCGGGACAAAGGTGCCAAACTTGGACGGAACAGGTGCTCGTGGAGTCTCGAGTTTCAAAATGGGCATCTCATGGCCTGGCACAACGATCGACATGTGGCACTACCCGTCACAGCGGCTCGGGCAGCACCGAACAGAGTGGGGGTGTTTGTGAAGTATCAGAAGGGCCGTCTGGTGTTTTATGATGCTGAGACTATGAGAACGCTACAGGAGTTTTCAGCCGTGCAAACAGCTGTGTTTGAAAGAGCACATCACCAGTTTACTGAGCCTCTCTACCCAGCTTTCCGCTTTTTTTCACCCAAAGACAAAAGCCATTATCATATGGAAATATGCGATCTCagtctttaattaatattagcggtaataaaaaaaaaaaaacgtgccgTGTAATTTTTGGTCTCTGATAAAAttaagttaatgtttatttcaagcagaaatcttttgtaacattgtttTGCTCTAATTAACAAGTCTTTACTGAGCAAAGTACATTATATTTCTTAGATAAAGGACTTAATGATCATTAACAGTTAATAACAGtgcatgcatataatatataggCCTatgttttcaccaaaaaaagcAAAGGTTATCAAGGTCAACAGGAGGAAAAGTCTATTCTTCTATAGCTTATGTAAAAATAGAGTGTACtatttaatagaaatgtatacTAATAAACATAATACTCAAGTCTGGTGTGGTGCACACTTTTCACAGAATTTAATTCTGTCTATGTGGCTTTTTAACCTTGCATTTGCAACAAATTATAGGCAGTTGATTAATATTACACAGTACTTAACtgtattattacactttaacacgGACACCTTAAAATGTAACCGAAATATTTAGTATTGTGTTTACCTGTAATCAATATCCAGCAATAAACTCTTCATCGCAGGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128675 lncRNA upstream 1213 9661227 ~ 9664139 (+) False mfsd8
TU128677 lncRNA upstream 1213 9661227 ~ 9664139 (+) False mfsd8
TU128698 lncRNA upstream 10075 9654959 ~ 9655277 (+) True G86984
TU128693 lncRNA upstream 43000 9619995 ~ 9622352 (+) False G86981
TU128691 lncRNA upstream 43064 9619759 ~ 9622288 (+) False G86981
TU128727 lncRNA downstream 95030 9764132 ~ 9767228 (+) False LOC122355274
TU128830 lncRNA downstream 225648 9894750 ~ 9895975 (+) False LOC122355255
TU128848 lncRNA downstream 290636 9959738 ~ 9959969 (+) True G87094
TU128849 lncRNA downstream 291545 9960647 ~ 9960958 (+) True G87095
TU128850 lncRNA downstream 409366 10078468 ~ 10097980 (+) True LOC122355662
XM_043253393.1 mRNA upstream 2390 9656669 ~ 9662962 (+) True mfsd8
XM_043253344.1 mRNA upstream 11966 9648751 ~ 9653386 (+) True si:dkey-219e21.2
XM_043253364.1 mRNA upstream 20591 9636473 ~ 9644761 (+) True capgb
XM_043253295.1 mRNA upstream 30235 9622803 ~ 9635117 (+) True polr2a
XM_043253309.1 mRNA upstream 89632 9559680 ~ 9575720 (+) False hdlbpb
XM_043253376.1 mRNA downstream 2419 9671521 ~ 9673314 (+) True LOC122355279
XM_043253377.1 mRNA downstream 2419 9671521 ~ 9673314 (+) False LOC122355279
XM_043253369.1 mRNA downstream 88145 9757247 ~ 9766664 (+) True LOC122355274
XM_043253381.1 mRNA downstream 105270 9774372 ~ 9780670 (+) True LOC122355282
XM_043253329.1 mRNA downstream 195712 9864814 ~ 9874515 (+) True LOC122355252
XR_006252198.1 other upstream 812903 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 960021 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1821269 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 2357123 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 2360504 7303138 ~ 7304848 (+) False G86142
TU128728 other downstream 88171 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 202562 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 812513 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 818518 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 873127 10542229 ~ 10581755 (+) False svila

Expression Profile