RNA id: XM_043253359.1


Basic Information

Item Value
RNA id XM_043253359.1
length 2237
RNA type mRNA
GC content 0.49
exon number 4
gene id wnt3
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9498576 ~ 9521662 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGAGGACGAGTAGGAgcgtgtgtgcgagtgtgtgaaAGAGACACTTACTCTCCTAACTACTGggacacacacactttcctcACCCAACTCAAAGAAGCAGCaaaccctggagaattttttatttatttatttttgccttcaTTTAAACCCCAAAATTGCTAATTATTCTCTCAAGCATCCATCTTTTTCCACCTTAAGACTTGCCTGCTGGGACTTAATTTTCAGCCCCTCTCTAGGAATTCTATGTACTGATCAATAGACAATTTCCATCCACACAAGACATACCTCATGGATTTGTACCTGGTTGGATATCTCATGTGCATGTGGTTGTCCAGCTCTCGGGTGCTTGGAGGCTATCCCATCTGGTGGTCCCTGGCCCTTGGGCAGCAGTACTCATCCCTAGGCTCCCAACCTATCCTGTGTGGCTCCATACCTGGTCTGGTGCCAAAACAGCTGCGCTTCTGCCGCAATTACATCGAGATCATGCCCAGTGTAGCAGAGGGAGTCAAACTGGGAATCCAGGAGTGCCAGCATCAGTTCCGAGGCCGCAGGTGGAACTGCACCACTATCAAGGACAATCTAGCAATATTTGGACCTGTGCTTGATAAAGCCACAAGAGAGTCTGCATTTGTTCACGCCATTGCCTCCGCTGGAGTGGCGTTTGCAGTGACCCGTTCATGCGCGGAGGGGACCTCCACAATGTGCGGCTGCGACTCCCATCATAAAGGCCCGCCGGGAGAGGGATGGAAGTGGGGTGGCTGCAGTGAAGATGCAGAGTTTGGGGTTCTGGTGTCTCGAGAGTTTGCAGACGCTCGTGAGAACCGACCAGATGCTCGGAGTGCCATGAACAGACACAACAACGAGGCAGGACGGATGACCATCCTGGAAAACATGCACCTGCGCTGTAAGTGCCATGGACTGTCAGGCAGCTGTGAAGTAAAGACCTGCTGGTGGGCTCAGCCTGACTTCAGGCTGTTGGGGGATTACCTAAAAGACAAGTACGACAGTGCCTCAGAGATGGTGGTGGAGAAACACCGGGAGTCCAGAGGCTGGGTGGAAACACTACGGGCCAAATACGCCTTCTTCAAGCACCCCACAGAACGAGACCTGGTGTACTACGAGGGATCGCCCAACTTCTGTGAGCCCAACCCGGAGACGGGCTCGTTTGGCACCCGGGACCGCGTCTGCAACGTGTCGTCGCACGGCATCGAGGGCTGCGACTTGTTATGCTGTGGCCGTGGCCATAACACACGGACAGAAAAGCGCAAGGAGAAATGCCACTGCATCTTCCACTGGTGCTGCTACGTCAGCTGCCAGGAGTGCGTGAGGGTCTACGACGTGCACACGTGTAAATAAGTGCAGGAAGAAAAGGACTAGtggacaaagagagagaaggaatgGGAGAGACTGACAACACACAACAAGATAGCGGCACTTCTGTGGTAGAACCCTTTACTAATGTGCCCTTTTTGATCTACACGCCCCAAAAGATGCCTATGGTGAGCATCATGGTTACTACTGCCATTCCTCTCACTTTTTTTTGCGGCACGCATTACATctgcaaaagaacaaaatgcCTTGTTATCATTCAGTCTTCTTTATCTGTAACACCATCTCTCTGATCATCTCACCCTGCCGCCCAAGGGCCGAAACAGGATATGTTCAAATACAACCAATGACACCGGGCAGACAAGAGGAGGGGGAAAGGAACGACGAGAAAATCTCGGTTAACTACTGAACGCTGGGTCTTGAAATATGCCCTGCTATACTACTGAATCCAATGAGAAGCCCACGTTTTTCCTCATGATTTCCCAATCATCTTGTACACTCCTAGCACATTCCCTATAATCGTATATGTTCAAATCGTGGAACATATTGCTGTTCGCTACATATAAAAACGTAATTTCTTTATATACGGCAGTTTGGAGGGATGCAATTGATACATTAGCATAGGGGCGGTGCAAACAGGAAAATGCATTATGGGTACCTTccgatttttttaaaaaaaggattttttgcAGAACATGTACATGCAAAGTCATCGGTGATTCTTCTGGATGAGTGCAGGACAGCTGGTGAAATGCATGACGGCAGAATGCAACGACACACACTGGGCTCACGTGCACCCGACCAGTAAAATTTGCACTTACAAAACTACTAATGACTATACTAATTCTAGAGATTACggtgattattttttaacatattctTTTTGATAAAGCTCCTCGTATATGA

Function

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K00312 WNT3; wingless-type MMTV integration site family, member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128623 lncRNA upstream 11397 9481585 ~ 9487179 (+) True G86943
TU128622 lncRNA upstream 13420 9481585 ~ 9485156 (+) False G86943
TU128592 lncRNA upstream 199727 9298270 ~ 9298849 (+) False pkd1b
TU128342 lncRNA upstream 623121 8875115 ~ 8875455 (+) True G86758
TU128340 lncRNA upstream 625031 8873327 ~ 8873545 (+) True G86756
TU128656 lncRNA downstream 74631 9596293 ~ 9600682 (+) True G86959
TU128658 lncRNA downstream 74631 9596293 ~ 9600682 (+) False G86959
XR_006252201.1 lncRNA downstream 88631 9610293 ~ 9616636 (+) True LOC122355291
TU128692 lncRNA downstream 98020 9619682 ~ 9622288 (+) True G86981
TU128691 lncRNA downstream 98097 9619759 ~ 9622288 (+) False G86981
XM_043253287.1 mRNA upstream 191745 9285663 ~ 9306831 (+) True pkd1b
XM_043253389.1 mRNA upstream 215496 9281191 ~ 9283080 (+) True mrpl27
XM_043253365.1 mRNA upstream 257084 9118929 ~ 9241492 (+) True ca10a
XM_043253308.1 mRNA upstream 555543 8896223 ~ 8943033 (+) False caskin2
XM_043253309.1 mRNA downstream 38018 9559680 ~ 9575720 (+) False hdlbpb
XM_043253310.1 mRNA downstream 38397 9560059 ~ 9575720 (+) True hdlbpb
XM_043253295.1 mRNA downstream 101141 9622803 ~ 9635117 (+) True polr2a
XM_043253364.1 mRNA downstream 114811 9636473 ~ 9644761 (+) True capgb
XM_043253344.1 mRNA downstream 127089 9648751 ~ 9653386 (+) True si:dkey-219e21.2
XR_006252198.1 other upstream 646127 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 793245 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1654493 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 2190347 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 2193728 7303138 ~ 7304848 (+) False G86142
TU128728 other downstream 235611 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 350002 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 959953 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 965958 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 1020567 10542229 ~ 10581755 (+) False svila

Expression Profile