RNA id: XM_043253364.1


Basic Information

Item Value
RNA id XM_043253364.1
length 1447
RNA type mRNA
GC content 0.46
exon number 9
gene id capgb
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9636473 ~ 9644761 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTTTTAGCATCCGTTTGTTTAGGCAGGGGTGTATTCAAGGGGGCCGGGCCAGAAGTAATGCAGGAAgtgatttttgtacatttttctctCCTCCACAAATTCTCTTCCTTTCTTTGTCGAAACTCTGCGGGGTTCTCCAGCTTCGACAGCAGCAAGAATGCTCCCATTCCAGGCCGCTCCAGGACAGTTTGGGGATGAGGTCAGACAGCCAGGACTGAGATGTTGGCGAGTGGAGAAGATGAAGGCTGTTCCTCTCGCCCAAGCTGAGGTGGGGGCTTTCTTCAACGGTGACTCCTACCTTGTGCTGGACAACCGGGGTGACCAAGGAGCAGACCTCCACATGTGGATCGGAGAGAAATCATCTCGTGATGAGCAGGTAGCTTGTGCCATGTTAGCTACACAGCTGGATAACTTCCTGGCTGGAGATCCGGTCCAGCACAGACAAGTTCAAGGCTACGAGTCCCCAGAGTTCATGAACCTCTTCCCCCGAGGTGTCAGCTATaagGAGGGAGGTGTGGAGTCTGGCTTCAGGAAATCACAGTCTGGATCTGGACCCGTTCAGAGGTTATACCAAATCAAAGGGAAGCGTAACATCAGAGCCAAAGAAGTAGATTTGAGCTGGCAGAGCTTTAACAAAGGAGACTGCTTTATACTTGACCTGGGCGAGACGATTGTGTCGTGGATAGGATCTCAGGCAAACATCTTTGAGAAGCAGAAGGTGAGGGAGATCGCCACATTGatcagagacacagagagacacggTAAAGCCCAGATCACTAACATCAATGAGGGAGAAGAGACCCAGGAAATGCTAAAGGTACTTGGTCCAGTGCCAGAGTTGAAAGAAAGCACTCCAGAGGCGGACAGCCAAGCAGATGCATCCAATTCTGCCTCCCTCTACAAGGTTTCAGATGCAACGGGGACGATGAAGTTGTCCAAGGTATCTGAGAAAAGTCCATTTGCCAAGGACTTGCTGGTTCGTGATGACTGCTTCATCCTGGACAATGGGGCCAAtggaaaaatctttgtttggAAAGGAAGTGGAGCCAACGCAGAAGAGAAGAGGGCCGCTCTGAAAATGGCAGATGACTTCATTCAGCAAATGAATTACCCCAAGATGAAAACACAGGTGGAGATTTTACCACAGGGCAGAGAGACTGTTATCTTCAAACAGTTTTTCCAAAActggaattaaattaaaaaaattaaaaaaaatttcagtgAATGAACTGCACTCTACTAGCTGTCAAAAGACCGTCACTTACTTCAATAAATCAGAGATGCTACATTAaacaaatgtacagttttattaaataagatcAGCTTCTATTCTGGGAGGGTTGCAGTAATAATGCATGAGTGAGAGAGGCTTTAATAAATGTctgttaccatatttttatgattttcaaaggcctttatattgctaaataaaaatgttgaactCG

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K10368 CAPG; capping protein (actin filament), gelsolin-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128693 lncRNA upstream 14121 9619995 ~ 9622352 (+) False G86981
TU128692 lncRNA upstream 14185 9619682 ~ 9622288 (+) True G86981
TU128691 lncRNA upstream 14185 9619759 ~ 9622288 (+) False G86981
TU128689 lncRNA upstream 14185 9619995 ~ 9622288 (+) False G86981
TU128690 lncRNA upstream 14185 9620101 ~ 9622288 (+) False G86981
TU128698 lncRNA downstream 10198 9654959 ~ 9655277 (+) True G86984
TU128675 lncRNA downstream 16466 9661227 ~ 9664139 (+) False mfsd8
TU128677 lncRNA downstream 16466 9661227 ~ 9664139 (+) False mfsd8
TU128727 lncRNA downstream 119371 9764132 ~ 9767228 (+) False LOC122355274
TU128830 lncRNA downstream 249989 9894750 ~ 9895975 (+) False LOC122355255
XM_043253295.1 mRNA upstream 1356 9622803 ~ 9635117 (+) True polr2a
XM_043253309.1 mRNA upstream 60753 9559680 ~ 9575720 (+) False hdlbpb
XM_043253310.1 mRNA upstream 60753 9560059 ~ 9575720 (+) True hdlbpb
XM_043253359.1 mRNA upstream 114811 9498576 ~ 9521662 (+) True wnt3
XM_043253287.1 mRNA upstream 329642 9285663 ~ 9306831 (+) True pkd1b
XM_043253344.1 mRNA downstream 3990 9648751 ~ 9653386 (+) True si:dkey-219e21.2
XM_043253393.1 mRNA downstream 11908 9656669 ~ 9662962 (+) True mfsd8
XM_043253345.1 mRNA downstream 20591 9665352 ~ 9669102 (+) True si:dkey-219e21.4
XM_043253376.1 mRNA downstream 26760 9671521 ~ 9673314 (+) True LOC122355279
XM_043253377.1 mRNA downstream 26760 9671521 ~ 9673314 (+) False LOC122355279
XR_006252198.1 other upstream 784024 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 931142 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1792390 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 2328244 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 2331625 7303138 ~ 7304848 (+) False G86142
TU128728 other downstream 112512 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 226903 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 836854 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 842859 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 897468 10542229 ~ 10581755 (+) False svila

Expression Profile