RNA id: XM_043253365.1


Basic Information

Item Value
RNA id XM_043253365.1
length 2281
RNA type mRNA
GC content 0.44
exon number 10
gene id ca10a
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9118929 ~ 9241492 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGCGGGAGCGCGCACTCTGCTTTAGCGGTCCGCGCACCCGCAGCGCTCGTGGAAGTCAGGAAATCTGAATAGCTGTTTTTCAAAAACGTGTCGGGATACATTTGCCGTTGTTTTTCAGGTTTCTAAACTGTCGCAGGATATCAAAAGTAACAGGGTCAGATCGGCGGAGTCCAGTATCTTCGTGGCATAACGGGAGCGCTTTTGGAACGGGGAAAGAACGCCTAAGTCATTTTATGGAGGCTTGCGGGACACAGCGAAAAATTTCTTAAAGTGTTTGGCACCGCGGATATCAGTCCAGATCCCCCCCCTTCAGTTCGGAGCATAGTCTCGTTTGGATTTCAGCCTGTTTGAAATGTGGCGTTATGTGATCGAGATAAATGTGCTATGTGTGTGATTTGGAGAGGATCTTGTGGAAGGTGTCCAGTGGGAAAGAGACTGGGTGGACTCATCTGCAACTGATCCCCGTTTTCTGAGCGCAATGGACTTGGAATGAAGACAAAACATGGATATAATCTGGGAAATATTTATTATCCTTCAAGCCAATCTCATCGTTTGCACTTCAGCTCAGCCAAATCCACCCAAAATCCACGAGGGATGGTGGGCTTACAAAGAAGTTGTTCAGGGGAGCTTTGTTCCAGTACCATCGTTCTGGGGCCTTGTCAATTCAGCATGGAATCTGTGTTCTGTGGGGAAGAGACAGTCTCCAGTCAACATTGAGACGAGCCATATGATATTTGATCCCTTCTTGACACCACTGAGGCTCAACACTGGTGGACGAAAGGTGGGAGGGACTATGTACAACACCGGCCGCCATGTCTCACTCCGACTGGACAAAGAGCACCTGGTGAACATCTCTGGTGGACCAATGACATATAGCCATCGTCTTGAGGAGATCAGGTTACACTTTGGAAGCGAGGACGGACAGGGCTCTGAGCATCTCCTCAACGGCCAGGCCTTCTCTGGGGAGGTGCAGCTTATACATTACAACCATGAACTGTACACAAACTACACAGAAGCTGCTAAGAGTCCAAATGGCTTAGTGATAGTGTCTATATTTATGAAGATATCCGAGACTTCAAATTCCTTTCTGAATCGGATGTTGAACAGAGACACCATCACAAGAATAACGTATAAGAACGATGCGTACCTTCTCTCGGGGCTAAACATTGAGGAGGTTTATCCAGAGACGGCAAGTTTTATAACTTACGAAGGGTCTATGACAATCCCACCGTGCTATGAGACTGCAACATGGATTCTGATGAACAAGCCAATTTACGTCACAAAGATGCAGATGCACTCCATGCGACTGCTAAGTCAGAACCAGCCCTCGCAGATATTCCTCAGCATGAGTGACAACGTGCGCCCAGTACAGCCCCTGAACAATCGCTGTATCCGCACCAACATCAACTTCAGCATGCAGGGCAAGGATTGCCCCAACAACAGGGCACAGAAGTTACAGTACCGAGTGAACGAATGGCTGCTGAAATAGAGCCAGACTGCAGACCAGCCCAAGAACACTAACAACATGaaaaagaacaaagagaaaTGCTCATGGATCAGTACAGAATGAAGACTGACATATGTCCTGCCAGATACAGTCATGAtgttgtaaagaaaaaaaaaaaaaagaccaaaccCCAGCAAGAAGAGACTTTGCACCCATGGCAAAGAGATCCAGTTTCATACATCCAATCAAAACTAGTGACATACAGTTATAACTACGCAAATGTTTTGATACCTTTTTTTGGGAAAAAcactaacaaaaaatataacatttatttcataggCTCTTCACAAATGGAACTGAATGTTTTTAGCCTTTGTACATATGGACAACTTGCTACCAAACTGGGAAAAAGGGACAGGACATTGAACCACCCTACCAATACAGAAACATCCTTGAAACATAACTGCATTCTCAATCTTTATTCTCGCTCACGCTGTGGAGAGGAAGGAGAGGCAGCCTTGCAGGTTTATTGTCAAGactaaaaaaacatcataaagaTGACTATGGGGTGATGTCTGtggaaggaagaaaaaaaaagtgtcttggccttgtaaatataattattcatgctgaaaatgaatatgtaaagatacaaataaacattaaaaaaataatatcagagggaaaaataaatgaaaaaaagttgaatattTTACGCTTGGCGCACTTTCTGGAGCAGAGCTGatgcctttttttctgtttcattgtTTACAATGGTCATACACTGTGTTTGATTAATGTTATCGGCCCAATAAATGTGTTTGGAAAgttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128342 lncRNA upstream 243474 8875115 ~ 8875455 (+) True G86758
TU128340 lncRNA upstream 245384 8873327 ~ 8873545 (+) True G86756
TU128273 lncRNA upstream 432812 8682389 ~ 8686117 (+) True G86713
TU128123 lncRNA upstream 773961 8344669 ~ 8344968 (+) True G86593
TU128088 lncRNA upstream 826867 8291843 ~ 8292062 (+) True G86577
TU128592 lncRNA downstream 56778 9298270 ~ 9298849 (+) False pkd1b
TU128622 lncRNA downstream 240093 9481585 ~ 9485156 (+) False G86943
TU128623 lncRNA downstream 240093 9481585 ~ 9487179 (+) True G86943
TU128656 lncRNA downstream 354801 9596293 ~ 9600682 (+) True G86959
TU128658 lncRNA downstream 354801 9596293 ~ 9600682 (+) False G86959
XM_043253305.1 mRNA upstream 175896 8896217 ~ 8943033 (+) False caskin2
XM_043253302.1 mRNA upstream 175896 8896220 ~ 8943033 (+) False caskin2
XM_043253300.1 mRNA upstream 175896 8896221 ~ 8943033 (+) True caskin2
XM_043253299.1 mRNA upstream 175896 8896221 ~ 8943033 (+) False caskin2
XM_043253301.1 mRNA upstream 175896 8896221 ~ 8943033 (+) False caskin2
XM_043253389.1 mRNA downstream 39699 9281191 ~ 9283080 (+) True mrpl27
XM_043253287.1 mRNA downstream 44171 9285663 ~ 9306831 (+) True pkd1b
XM_043253359.1 mRNA downstream 257084 9498576 ~ 9521662 (+) True wnt3
XM_043253309.1 mRNA downstream 318188 9559680 ~ 9575720 (+) False hdlbpb
XM_043253310.1 mRNA downstream 318567 9560059 ~ 9575720 (+) True hdlbpb
XR_006252198.1 other upstream 266480 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 413598 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1274846 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 1810700 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 1814081 7303138 ~ 7304848 (+) False G86142
TU128728 other downstream 515781 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 630172 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 1240123 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 1246128 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 1300737 10542229 ~ 10581755 (+) False svila

Expression Profile