RNA id: XM_043253370.1


Basic Information

Item Value
RNA id XM_043253370.1
length 2672
RNA type mRNA
GC content 0.44
exon number 5
gene id josd1
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8733817 ~ 8738248 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCGGAAAGCCAATGACGTTTTGCGCATGCTCACGTTGAGCCAGAGAGCTGCAAGGAAAAAGTACAAGAGACAAAGGAATAAACAACTCAAGGAGCGGACGCGAAAACAAGAAGTTAAAGGAGCGAAAGCAGCCCAGCCTGTAACATATCGTATGCAGACAGAGCCAAGGTTATCTCTGCCGTTCTCACGGTGGTCCGCTATGGCAGTTGCCAGGGTCCTGCACTGCTGACCCATTTAGTCCCAGTCAGCTGTACAAGTCATGCTGTAAGTCTTTTCCACCCTGATGTCGGCCAAAATGGAAAGAACTGCTCTGCCCTAGTGGTTACTATGGTGCTTGGCAAGTCTGTGTGCAATAACAACATGAAGAGCGCAGAAAGAAGACACAATCAAGTCTGCTTCTGAGAAGATACATCGTTtccacttgttttttttgtttggttttttttttttcactgattcGCTGCAAGGTGCGCTGGCTCACCTTTCACTCCAGTAGCTACCTCCCCTCCCCTTGCCACTCATCCCGAGCAGCTGAGCGGTTGCTGTGGAGATGATAGTGGTGACATAGCAGCAGGAATGGGGAGTACTCCATGTTCTGGTAAGGGGAGGGGGGTCGGGGGGTTTCAGGAGCTGGGCTGTATGCCATGGAAGGTCAGCAAGCAGAAAGGAGAAACCGTCGTTGGACGGGGGTCCGAGCTGGAGGACAGGCCGTATGCTGGAACGCCCCCCACCTCGTCACAACCTACCGCCATTTATCACGAAAAGCAGCATCGGGAGCTGTGCGCTCTGCACGCCCTAAACAATGTCTTCCAGGACGGAGCGGCCTTCAGTCGTGATGCACTTCAGGACATCTACCAGAGgctgtCCCCTAGCACTTTGGTAACGCCCCACAAGAAAAACATGCTGGGAAATGGCAACTACGATGTGAACGTCATCATGGCTGCATTGCAGACACGTGGGTTTGAGGCTGTTTGGTGGGACAAGAGAAGGGATGTTGGCTGCATTGCACTGCCGAACGTCACAGGATTCATCTTGAATGTGCCATCCAATCTGCGCTGGGGGCCGCTGCGACTGCCCCTCAAGCGCCAACACTGGATTGGAGTTCGAGAAGTGGGAGGAGTCTATTATAACCTAGACTCCAAACTCCGCAGTCCTCATGCTATCGGAACAGCTGATGAACTGAGCTTCGAGGGAAGAACTGTGAACTCCTATTGGTTGTGTCAGAGGAGGTGGAAGTCCACCAGACGTGGAGGTCTGATAACTGATGaatgttttggatcattttttgttgttgttgttgttgttattttgtttttgttttggaggTTTCTCAAATTCATGCTCAGGAGGGAAATGTGAGGTTCAATCAGGGACCCATTTAAAGAGCAAATGGAGTTGCACTCAACTAGTCATGAAAGCACACTGCTCAGacttgtttacacacacacacacacacacacacacacacacacacaccgctggaCTCTTTCCATGGAGACTGAAGCAGCAAAGGACACACACAGGGATATCACAAGACAACAAAACACTACACAGAGAATTTTGTTTGGTATTTGGGAttctgatgcatttttttatacattgattatttcttttattttgtactgttttctGACTTGAAAGTGAGAGGTTATGGAATTATTAGTGATGTGTTCTCCTCGTGCATCACCTGTCATCCTCGACACTTCTCTCTttccatatgtttttttttttattctccccAGTGCATCCATGTGATCGTCTAAACTGTCCGCCACACATTAAAGGTCACCAAAAAAGCTATTCATTTGACCAACTGGATTTTAACACAGGGGTGCATATGTACTTATTTAGTGCATGTACTTGAAGATTTAGAGAAGGAACACCAGTAGCCCCTGCTTAACCGTTTCTTACATATTTAATGGCTTAGTGACAGATGAGATGTTTCCTGTGTATCACAGTACAGCATGGCACCACAGTAATTGGATGTTTTGTGTTAGTTTCCTATAACATATGTTACCAAAACGGTCACTTGTTAATCTCTTACCTTAAACTGTTGCTCTGGACACCCTTTTCTTGTTAAACAGTTAGACTTGTTAAATCCTAGACTACATGTAGGACAATAAACAGGTAAGTGTtggtagtaaaaaaaaaaaagttaaactgcCAAAAACTGTGTTGTTAATTGAAATGGTTGTATGTAAGAGTTAGAAAGGTTGAGGTCTCTGAAATTGTGCAAAGTTTATTCATCTTTGATTGATATTGGATTAACACGGCCTTAAACTGTTTACAGAGGGAGCAGATTTACACAAAGGGAAGTCTAATAATGCATCTCAGGTTATCTTCCGATCCAACTTGATTAAAGTTCACTTGTTAAACACCGATCTTCAACATATGATAGATAACACTTCAAATAGATTATAGACACTCGAATCAGATACTACAGCTTAAAAGGAACATTCCACATGTCCATACACAGGGTGCTTTGTAATTCTGTAGAGATGAATAGATTCCTTTGCCATGACAATCTAAATCCCCACAACCCGTTTTTCAGGGGGATGGGGACAACATGTGCTCATGCCAttgtttttcattcaaataaaatgcttatGATGGCACTTTATGTATGATGTAAAATGTGCTGTgacatcattaaaaatgtctttatatgta

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008242 omega peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128431 lncRNA downstream 103610 8627094 ~ 8630207 (-) True G86809
TU128416 lncRNA downstream 104845 8597394 ~ 8628972 (-) True G86798
TU128428 lncRNA downstream 107488 8623297 ~ 8626329 (-) True G86807
TU128385 lncRNA downstream 195611 8535973 ~ 8538206 (-) True G86775
TU128374 lncRNA downstream 220572 8511635 ~ 8513245 (-) True LOC122355061
TU128502 lncRNA upstream 83632 8821880 ~ 8823436 (-) True G86848
TU128508 lncRNA upstream 100103 8838351 ~ 8838612 (-) True G86852
TU128509 lncRNA upstream 102566 8840814 ~ 8841155 (-) True G86853
TU128510 lncRNA upstream 105139 8843387 ~ 8843774 (-) True G86854
TU128514 lncRNA upstream 114697 8852945 ~ 8853257 (-) True G86856
XM_043253374.1 mRNA downstream 828 8728809 ~ 8732989 (-) False cbx7b
XM_043253373.1 mRNA downstream 829 8728809 ~ 8732988 (-) True cbx7b
XM_043254475.1 mRNA downstream 28733 8698493 ~ 8705084 (-) False l3mbtl2
XM_043254474.1 mRNA downstream 28828 8698493 ~ 8704989 (-) True l3mbtl2
XM_043254476.1 mRNA downstream 28828 8699251 ~ 8704989 (-) False l3mbtl2
XM_043253322.1 mRNA upstream 694 8738942 ~ 8743606 (-) True xrcc6
XM_043253311.1 mRNA upstream 43431 8781679 ~ 8808640 (-) True mrtfab
XM_043253320.1 mRNA upstream 70834 8809082 ~ 8821061 (-) False rgs9b
XM_043253321.1 mRNA upstream 71920 8810168 ~ 8821062 (-) True rgs9b
XM_043253341.1 mRNA upstream 93834 8832082 ~ 8837257 (-) True LOC122355256
unassigned_transcript_1920 other downstream 46247 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 46269 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 121372 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 214708 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 215452 8518235 ~ 8518365 (-) True LOC122355888
TU128530 other upstream 137369 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 743311 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 743382 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 746698 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 746698 9484946 ~ 9489312 (-) False ormdl3

Expression Profile