RNA id: XM_043253372.1


Basic Information

Item Value
RNA id XM_043253372.1
length 1233
RNA type mRNA
GC content 0.47
exon number 8
gene id snf8
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8870065 ~ 8872539 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCAGACCGACGGGTGGCGCTACCGGACACATTTACCAAAACATTACCGACGAGATCTTAGTCGTGTACAGAAGAAATAACACACTTCTGTGGATGTTTTCTTCCTGGACTGTTTGCGACGTTATAGATAGAAAGCATAATTGAAAGAGAGCAACCCTGTACGGTAGTTTTATTGTAACGTATTCAGTGTAGTTAGCCCGTTTTGTCAGATTGTGTCTAGACGCGTGTCTCTGGAACTATGTAGCTCGTGAGCCGACTGGGAAGGAAATCACCACGGGCGTCAGAACGGGGAAATAATAAGAGTTTCATTTAGTACAATTCTAGGCGTTTTTATTTAGACATCATGCACAGAAGAGGAGTCGGAGCTGGAGCGATCGCCAAAAAGAAACTCGCGGAGGCCAAGTATAAAGAAAGAGGCACCGTCCTCGCCGAGGATCAAATCGCACAGATGTCAAAACAACTGGAAACCTTTAAGACCCATTTGGAAGAGTTTGccagcaaacacaaacaagaaaTCCGCAAGAGCTCACAGTTCAGGGTGCAGTTCCAGGAGATGTGTGCCACTATAGGGGTTGATCCACTGGCATCTGGAAAAGGATTTTGGTCCGAGATGCTCGGAGTTGGAGATTTCTACTATGAGCTTGGCGTACAGATCATTGAAGTCTGTTTAGCTCTAAAACACAGAAATGGTGgtCTCATCACACTTGATGAACTTCACCACCGTGTCTTGAAAGGAAGAGGGAAGTTTGCTCAAGATGTGAGCCAGGATGACTTGGTGCGGGCCATCAAGAAACTCAAGGCTATGGGAAATGGCTTCGGGATGATTCCCGTTGGAGGCTCTTATCTAGTGCAGTCGGTCCCAGCAGAGCTCAACATGGATCACACCGTTGTCCTTCAGCTAGCAGAGaaaaagggCTACGTGACGGTGAGCGAGATCAAAGACGGCCTCAAGTGGGAGAGAGAGCGGGCCTGTCACGTCCTTGATCACCTGCTGAAAGAAGGCTTAGCGTGGCTGGACTCCCAAGCTGCAGGGGAGCCACAGTACTGGCTTCCTGCTCTGTTCTCGGAGCTGTTATCACGAGACGTTACGCCCGAGGAGGCCAACCAAATGACTCCTTGAGAAGAAgacattattttgtaaatacattatCAGGGCGGATAGAGGCGAATGTCCAGCTGTTTTGACaggaaaaacagtcaaaatggaaaataaaaacatctatttaGTCACA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12188 SNF8, EAP30; ESCRT-II complex subunit VPS22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128523 lncRNA downstream 1003 8867892 ~ 8869062 (-) True G86861
TU128525 lncRNA downstream 5802 8863441 ~ 8864263 (-) True G86862
TU128518 lncRNA downstream 13955 8855673 ~ 8856110 (-) True G86858
TU128515 lncRNA downstream 14524 8855329 ~ 8855541 (-) True G86857
TU128514 lncRNA downstream 16808 8852945 ~ 8853257 (-) True G86856
TU128593 lncRNA upstream 427140 9299679 ~ 9299899 (-) True G86916
TU128616 lncRNA upstream 439132 9311671 ~ 9313698 (-) False thrab
TU128617 lncRNA upstream 439162 9311701 ~ 9313528 (-) False thrab
TU128629 lncRNA upstream 609091 9481630 ~ 9489290 (-) True ormdl3
TU128749 lncRNA upstream 701095 9573634 ~ 9574525 (-) True G87019
XM_043253325.1 mRNA downstream 17831 8845114 ~ 8852234 (-) False snx11
XM_043253324.1 mRNA downstream 17831 8845115 ~ 8852234 (-) True snx11
XM_043253323.1 mRNA downstream 19468 8845111 ~ 8850597 (-) False snx11
XM_043253341.1 mRNA downstream 32808 8832082 ~ 8837257 (-) True LOC122355256
XM_043253342.1 mRNA downstream 32845 8832082 ~ 8837220 (-) False LOC122355256
XM_043253391.1 mRNA upstream 3134 8875673 ~ 8878131 (-) False LOC122355288
XM_043253380.1 mRNA upstream 70572 8943111 ~ 8946818 (-) False nme2a
XM_043253379.1 mRNA upstream 70572 8943111 ~ 8946320 (-) True nme2a
XM_043253326.1 mRNA upstream 401826 9274365 ~ 9281289 (-) True eme1
XM_043253352.1 mRNA upstream 439114 9311653 ~ 9939849 (-) False thrab
unassigned_transcript_1920 other downstream 182495 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 182517 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 257620 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 350956 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 351700 8518235 ~ 8518365 (-) True LOC122355888
TU128530 other upstream 3078 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 609020 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 609091 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 612407 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 612407 9484946 ~ 9489312 (-) False ormdl3

Expression Profile