RNA id: XM_043253373.1


Basic Information

Item Value
RNA id XM_043253373.1
length 2155
RNA type mRNA
GC content 0.41
exon number 6
gene id cbx7b
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8728809 ~ 8732989 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCTCTGTGTGGCGCACGGGGGCGCGCTGCACGCTGCAGATGTGTCGCAGATTTAAAAAGTCACTGTACTCATCTAGTACAAGGAAATGGAGCGGTGCAAAGCATAAAATACTGAATTGTCAACAAGGCAGCGGAAGAGCGGGAACGCGTGCAGCCATTGTAACAGCGCACGGGATTTGCAATTCATAGTTACTTTAACGACCAGAAGGAAAAGCGCAGAGACACGTTGACAGCTACTTCATTATTTTTAGGGGGACAACTTAACTGATGGAACTGTCGGCAATCGGCGAGCAAGTGTTCGCCGTGGAATCAATCATAAAGAAAAGAGTTAGAAAGGGTCATGTCGAATATTTATTGAAGTGGAAGGGGTGGCCTCCCAaGTACAGCACATGGGAGCCAGAGGAGCACATTCTTGACCCTCGACTGGTTTTAGCATACGAGGAAAAagaacagagagaaaggTCGGTGAGGTGGCGTAAAAGAGGCCCAAAACCGAAAAGACTCTTCATGCAGAGAAACATTTACGCAATGGATCTACGCAGCGCACACAAAGATACGGGGAACACTTCGGCACATCTGCCGCTATCGCTTGACCCAAGGTTCCAGTCCACAGGGGCTTGTATATATCGACAATTAACCCACcacaagaaaaagaagaaagcatcCAGAGAGACCTCTGAGGAAGAATGGGACAGAAGagaagatgatgatgacgacgacgatgatgatgatgatgattacgACGATGATGATGAGGGGGTTatggaagaggaggaggaagaagaagaagaggacaCAAGACAAGGAGGAACTAAAACTGGCAGCAACACTTTAAACAAGCGTGTCAGGAGAGGTTGCTGGACTCAATCCACTGGATCAGACGCAATGACTATTTCTCCCTTACCTGAAGACTGGAGTCCAGTTATGGGCCCAGAGGAGGTCATTGTGACAGATATCACCATCAACTCACTGACTGTGACTTTTAGAGAGGCCTTGGTAGCAAGGGGGTTCTTCAGGAGCTGGGAGATGGAGATCTGACATCACAGAGACTGAGGATGGTCAGAGCCGGGAAAGAGAATTGGTACATTCTTGTTTTGCATTGTTGATTATGTGCTTGCACAACTTCCGCCAACGTTTCGGACTACGTTAATTTGCACTATTAGTTCTAGTTGAGTTAAAACCTTCCGAAATGTTGTTTCAGAGATTACAATCAAATTAACAGTAACAGGTCATTTAATGGCAGTAACTGATAGTATTTgatcatgaaaacaaaaaaatcaagccAGTTCTCCGACACTggttttaatagtgtttttagTTTACAGATTTGGCTAACTGGGATAAATGTAATTTGGTGGGGTCATATATTTGCATGAAATATACATAATTCTAGTTCAGAGTAGCACAGTGAAGTATTCCTAAAAGCCAATATGTCACATATGTCTAAACATATTCAcattacatgtatatgtgtgtgtgtgtgtatatatatatatacaggtatatatatacacacacacacatatatatactcgGTGAACATAATCTAATCATAATCACTTTAAATTGCACACCTCTCACAGAATTAGTGGCCTCTTGATACTcaaaatatgtgaaatacaACTTTGGAAAATAGCTTTTCAACACTTTGCTGTCCTTGACACTTCATAAGCAAAATATTATAGTGTGAAACAAAATATCCTGCACTCCTTGCACAGTTATGTTCTAACCTTTGAGCATAATTATGTGTATGGAataaagttgcattttattttttgtcaacaCTATGACTTGCTAGTATCTCATCTATTTGCAGTGTTTGCGCATTTTTTTGTGACTTGCACCACCTTGCACAGTAGTCTATGTTGTAGATTTAACTTGACtattttctgtgttattttagtCCGAGATGAAAACTGAGACatgaagataaaaaaacaatctaTATCGAGGTGAATGTATATTTAGCCTCTAGGAACATCCATCTCTGGGGGCTCAACTGTTGAATATTTGACTTCATGTGACCTGTATATATTTGATAGACTTATGTCTGTGCCAAATGTCTGTGGTTGCTTTTGCTATTCAGAGTATTTGcactttaaaatggaaaacttgGTATTATGATGCCATTAATAAAACCTCGGTGTAACTCTA

Function

GO: NA

KEGG:

id description
K11454 CBX7; chromobox protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128431 lncRNA downstream 98602 8627094 ~ 8630207 (-) True G86809
TU128416 lncRNA downstream 99837 8597394 ~ 8628972 (-) True G86798
TU128428 lncRNA downstream 102480 8623297 ~ 8626329 (-) True G86807
TU128385 lncRNA downstream 190603 8535973 ~ 8538206 (-) True G86775
TU128374 lncRNA downstream 215564 8511635 ~ 8513245 (-) True LOC122355061
TU128502 lncRNA upstream 88892 8821880 ~ 8823436 (-) True G86848
TU128508 lncRNA upstream 105363 8838351 ~ 8838612 (-) True G86852
TU128509 lncRNA upstream 107826 8840814 ~ 8841155 (-) True G86853
TU128510 lncRNA upstream 110399 8843387 ~ 8843774 (-) True G86854
TU128514 lncRNA upstream 119957 8852945 ~ 8853257 (-) True G86856
XM_043254475.1 mRNA downstream 23725 8698493 ~ 8705084 (-) False l3mbtl2
XM_043254474.1 mRNA downstream 23820 8698493 ~ 8704989 (-) True l3mbtl2
XM_043254476.1 mRNA downstream 23820 8699251 ~ 8704989 (-) False l3mbtl2
XM_043254276.1 mRNA downstream 41261 8682443 ~ 8687548 (-) False plbd1b
XM_043254277.1 mRNA downstream 41261 8682443 ~ 8687548 (-) False plbd1b
XM_043253370.1 mRNA upstream 829 8733817 ~ 8738248 (-) False josd1
XM_043253371.1 mRNA upstream 829 8733817 ~ 8738243 (-) True josd1
XM_043253322.1 mRNA upstream 5954 8738942 ~ 8743606 (-) True xrcc6
XM_043253311.1 mRNA upstream 48691 8781679 ~ 8808640 (-) True mrtfab
XM_043253320.1 mRNA upstream 76094 8809082 ~ 8821061 (-) False rgs9b
unassigned_transcript_1920 other downstream 41239 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 41261 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 116364 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 209700 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 210444 8518235 ~ 8518365 (-) True LOC122355888
TU128530 other upstream 142629 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 748571 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 748642 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 751958 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 751958 9484946 ~ 9489312 (-) False ormdl3

Expression Profile