RNA id: XM_043253379.1


Basic Information

Item Value
RNA id XM_043253379.1
length 733
RNA type mRNA
GC content 0.48
exon number 5
gene id nme2a
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8943111 ~ 8946818 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCACTATTCGCGGTTTAAGCCGTCAGTACGGGCTTGATCTCTCTCAGTCACTGACATGTAATTAGCGATGGGGTCAGGGGCTTCCTCAGCCAAACCCCCCTCCACACCTGCACCCCGGTGTCCCAAACGCTCGACGGCcccAATGTCTGGAAATGAAGAGCGCACTTTCATTGCCATCAAGCCCGATGGAGTGCAGAGGGGACTTGTCGGAGAGATCATCAAGCGTTTTGAACAGAAGGGCTTCAAGTTAGTTGCTATGAAGTTAATCCAGGCCGATGAGGATCTTCTGAGACAGCATTACTGTGACCTGAAGGATCGGCCTTTCTTCCCAGGTCTTGTCAGTTATATGTCCTCTGGCCCTGTGGTTGCCATGGTGTGGGAGGGTTTTAACGTTATAAAAACCGGTAGAGTAATGCTCGGCGAGACTAATCCCATTGACTCCAAGCCTGGGACTATCCGAGGTGACTTTTGCGTTCAGGTTGTCCGGAACATCATTCACGGCAGTGATTCTGTCGAAAGTGCCAACGCCGAGATCAACCTGTGGTTCAAACCAGAAGAGATCTCTGACTACACCAAATGTCAGGAAAGCTGGATCAACGGCTGAACGCATTCTTCtttttctgcactttttttcccctcccggGTGCTTCTGATTTAAATCAAcccgttttcatttttattcccaCTGTTTCTGGTGTTTGTCTttacaataaaaccaaaaatcatTTCTT

Function

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128523 lncRNA downstream 74049 8867892 ~ 8869062 (-) True G86861
TU128525 lncRNA downstream 78848 8863441 ~ 8864263 (-) True G86862
TU128518 lncRNA downstream 87001 8855673 ~ 8856110 (-) True G86858
TU128515 lncRNA downstream 87570 8855329 ~ 8855541 (-) True G86857
TU128514 lncRNA downstream 89854 8852945 ~ 8853257 (-) True G86856
TU128593 lncRNA upstream 353359 9299679 ~ 9299899 (-) True G86916
TU128616 lncRNA upstream 365351 9311671 ~ 9313698 (-) False thrab
TU128617 lncRNA upstream 365381 9311701 ~ 9313528 (-) False thrab
TU128629 lncRNA upstream 535310 9481630 ~ 9489290 (-) True ormdl3
TU128749 lncRNA upstream 627314 9573634 ~ 9574525 (-) True G87019
XM_043253391.1 mRNA downstream 64980 8875673 ~ 8878131 (-) False LOC122355288
XM_043253372.1 mRNA downstream 70572 8870065 ~ 8872539 (-) True snf8
XM_043253325.1 mRNA downstream 90877 8845114 ~ 8852234 (-) False snx11
XM_043253324.1 mRNA downstream 90877 8845115 ~ 8852234 (-) True snx11
XM_043253323.1 mRNA downstream 92514 8845111 ~ 8850597 (-) False snx11
XM_043253326.1 mRNA upstream 328045 9274365 ~ 9281289 (-) True eme1
XM_043253352.1 mRNA upstream 365333 9311653 ~ 9939849 (-) False thrab
XM_043253351.1 mRNA upstream 365333 9311653 ~ 9407594 (-) False thrab
XM_043253353.1 mRNA upstream 365333 9311653 ~ 9366717 (-) False thrab
XM_043253354.1 mRNA upstream 365333 9311653 ~ 9337097 (-) True thrab
TU128530 other downstream 64999 8875617 ~ 8878112 (-) True LOC122355288
unassigned_transcript_1920 other downstream 255541 8687498 ~ 8687570 (-) True trnar-ccu_66
XR_006252240.1 other downstream 255563 8683052 ~ 8687548 (-) False plbd1b
TU128398 other downstream 330666 8610552 ~ 8612445 (-) True G86783
XR_006252259.1 other downstream 424002 8518980 ~ 8519109 (-) True LOC122355887
TU128628 other upstream 535239 9481559 ~ 9489290 (-) False ormdl3
TU128627 other upstream 535310 9481630 ~ 9489290 (-) False ormdl3
XR_006252200.1 other upstream 538626 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other upstream 538626 9484946 ~ 9489312 (-) False ormdl3
TU129388 other upstream 2096568 11042888 ~ 11045882 (-) True LOC122355648

Expression Profile