RNA id: XM_043253381.1


Basic Information

Item Value
RNA id XM_043253381.1
length 2733
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC122355282
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9774372 ~ 9780670 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAAATAAACAGCGTGGGACCTGGCCCATCTATGATGCAGGCTATGACACAATATCCTGCCCTTGGACAAGTACCTGTAGCCCACCCCTATGAACCATCTCAAACTGGCAAGGAGCTCAACAAGTATGCTTCGCTCAAGGCTGTGGCTGAAAAAGCGAACGAAAACTTCTACACTAACAGACGGCACCTAGCCGACCTGGCAGCAAAAGGCACTCTTCCCATGCACTCGGTGAGTCTGGAGCAGGAGCCCACCAACCCTTACAGCCCCGAGCTGCCCTGCCAAAAGCAGAACGGACACAAGTCCAAAAGCACCAAGGTCCACAGCTCCCACCCGCTAGCTTTTGGCTCAAACACCATCGCCAACCCCGGCATGCTGAAGGGCTGGGAGACCACAGAAACGCTGGGCCGTCGGCACACGTACGCCCCCAAGAAGCACAGCGCCACCGTGGAGCAAGTGAACGAGCTGACATCTGCCCACAGCCAGCACTATCTGCCACCACATCCGTACTTCGTCACCAACAGCAAGACTGAGGTGACCGTGTGAACGGGGCACAACGCCGGGTTTATCGAGCCCAGGCCTGAGAACGGAGAACGAGGATAATAAGGGAAGCCTGATGGAGGAAGAAGAGTGGATTAGGATCCCGTCCTGCTGGAAGGATTGAACCGAGCGGTCTGGCTCGAGATCTGCATGGCTGTATGTGTGCTGTTTGTCTTTGAGGAACAGGCGTGCATTGGCGACGTTCGCACGGGAAACCGTGGAACTCTTTCTGTGTCCATTCCGTCACAAACGAATAACCTGAGCTGTAGTGATGAGGCCATCAGTCAATGTGATGAGGACCCATTGAAACCCTAAGCAATCAATGCAATCAAACGTACTACTGTAGATGATGTTTCGCAACAGCTTGTGAGAAAGTCCCTTAAGAAACACTATCCTGTTTTTCTCAGAATCTTGTATATAACAGAATGGATGAAAAATGTCAAAGGCTTCCACGGATAATTAAAGGACATCGATCTGGAAGATGACAAATGACGTGAGGACAATCGTGTCTCAAGTTCTTCTCATCTCGTCACTCGAGATCTCCAGAGCGTGTGCACCAAAAACCTGTAGCAACGTAACACGCTGTATCCTGACAAACACTGGGCTTGTGCCTTTCCAACAGAAGAACTCATTATCTAGGAGCTCTTGTGCTTTTCAGCGAGCACATGGTGTTTCTTCAATAACaaagatgcataaaatataaacaaatctaTTGTTTACGGCTGTCATACTTCGgtatagaaaatgtttattgtcaGTGTTCTTAAATACACATTTCCCTTCTGTTTTCGCCATTTTTTTCGGATGTGTTCACACATTGTATGGCCCTATCTTTTAGTGCAACTGTAGACTGTAGACAAAGGAAGTACTCTAGGGTTAATGATAGACGttcattatttttcaatgttgtATGATAAAAGTGAATGGTAAATTCTGATAGCGAACAAGATTGTTACGACACTGCCATTGTTGCATTCCGAGTGTATTCGGTATCGAGAATGGATTCAGTAGTTTCTTTTGTCTTTAGCATCAAAATGTGAACCATTTCAATTAGCGTAAGGGCAAAAGGCTGCATTCAGTTTCCAAACCTGAACGTTTTGTCATCCACATCGAAATTATCCCAGGTATCTGGCTGTGAATAATGTGGGTCACATAAACTTTAATTGCTGTGAAACAAGTGGCTTTATCTCGGtactcttaaaatgtttttgacctAAACCGAGATCGTAAATTAGCAGGCTAACTCAttgtggaaataaaaatacatttacatatctAGTAGTACAGCTTTTTGCACGCTTACACGCTTTTTCACATTCTCAGTATTCACGATATAAGGGGTGATCACATTAAATTTTGTGTTTGTACTCTGCTGTTTTTAAGTTTGGTGAACTCTGGCTTGCAAATCTGTACAGCGATGTTTGATCATTAGTGGATGTAAATGTCACAGACTGACCTGCTGCTAGTGGCGCAGAAATtgcacacttcacctttaaggtAAActaatagttcaaccaaaaagaAATATCTGTTCAAATTTTACCCTCAGGGCATCCAAAATGCACAGTAAATGAGTTTGTtctttggagaaatttagctttATAACACTTGCTTATTAGTGGATCCTgatgtgcagtgaatgggtgccgtcagaatgagagtccaaacagctgagaaaaacgtcacaataatccacaagtcgtcaacttgtttctgtttttcacgTTAAATGATTGCCTGGAATCCTGCAGCTTacttatggattattgtgatgttttttatctGCTGTTTGGATGCATTAATGaccaagtgatgtaatgcaagatttctccaaatctgaacTCATTTACTCAAACTCATCTTACATATATGTTTATGACATTAGTTTCTATACTAATACGCAACGCAATGTAATGTGTAATTCAAAATATGGATGAAACACCtataaaagaaatcaataaaaagaacATTGGGTTAGAGTTTAACAAAATTTTCATAAAGTGAAAGGTTGGCACAGGCAACATCTCAGGACGAGCATTCAAGTGATATCTGACAGCTGGTGACATTTTAGGTGTGGTATGTCTTtaactgcacatttaaaaatgttttaaatttgtacAAATACTGGAACAGAGTGTCAGCTACACAAATCTCCTTTGCGAGTTttaattaccattttaaaatattgaaaatc

Function

GO:

id name namespace
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process
GO:0032591 dendritic spine membrane cellular_component
GO:0045202 synapse cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128727 lncRNA upstream 7144 9764132 ~ 9767228 (+) False LOC122355274
TU128675 lncRNA upstream 110233 9661227 ~ 9664139 (+) False mfsd8
TU128677 lncRNA upstream 110233 9661227 ~ 9664139 (+) False mfsd8
TU128698 lncRNA upstream 119095 9654959 ~ 9655277 (+) True G86984
TU128693 lncRNA upstream 152020 9619995 ~ 9622352 (+) False G86981
TU128830 lncRNA downstream 114080 9894750 ~ 9895975 (+) False LOC122355255
TU128848 lncRNA downstream 179068 9959738 ~ 9959969 (+) True G87094
TU128849 lncRNA downstream 179977 9960647 ~ 9960958 (+) True G87095
TU128850 lncRNA downstream 297798 10078468 ~ 10097980 (+) True LOC122355662
XR_006252232.1 lncRNA downstream 297988 10078658 ~ 10098941 (+) False LOC122355662
XM_043253369.1 mRNA upstream 7708 9757247 ~ 9766664 (+) True LOC122355274
XM_043253376.1 mRNA upstream 101058 9671521 ~ 9673314 (+) True LOC122355279
XM_043253377.1 mRNA upstream 101058 9671521 ~ 9673314 (+) False LOC122355279
XM_043253345.1 mRNA upstream 105270 9665352 ~ 9669102 (+) True si:dkey-219e21.4
XM_043253393.1 mRNA upstream 111410 9656669 ~ 9662962 (+) True mfsd8
XM_043253329.1 mRNA downstream 84144 9864814 ~ 9874515 (+) True LOC122355252
XM_043253346.1 mRNA downstream 96946 9877616 ~ 9881012 (+) True LOC122355261
XM_043253347.1 mRNA downstream 96946 9877616 ~ 9881012 (+) False LOC122355261
XM_043253338.1 mRNA downstream 102363 9883033 ~ 9899001 (+) False LOC122355255
XM_043253337.1 mRNA downstream 102363 9883033 ~ 9899001 (+) False LOC122355255
TU128728 other upstream 14911 9757273 ~ 9759461 (+) False LOC122355274
XR_006252198.1 other upstream 921923 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 1069041 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1930289 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 2466143 7307924 ~ 7308229 (+) True G86143
TU128819 other downstream 90994 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 700945 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 706950 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 761559 10542229 ~ 10581755 (+) False svila
XR_006252210.1 other downstream 761559 10542229 ~ 10579996 (+) False svila

Expression Profile