RNA id: XM_043253389.1


Basic Information

Item Value
RNA id XM_043253389.1
length 694
RNA type mRNA
GC content 0.43
exon number 4
gene id mrpl27
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9281191 ~ 9283080 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCAGCCAAGTTCTGCAGTTCGCGGGTTCTGAAGCATCACGGGAACGCGTGGGCTGCGTCACGCTTACGTCATTCAAGATGGCGGCGCTCGCGTCCTTGATGCTGCAATCTAGAGCCTGTATTCTGTTCAGTCAGTCGCCCACAGTTGTACTGACGAGATTTGCTTCAAAGAAATCAGGAGGGAGCAGCAAAAACTTGGGAGGGAAGAGTGCTGGCCGCAGACATGGTTACAAGAAACAAGATGGAAACTTTGTACATGCGGGCAACATCCTTGCTACGCAACGCAAGGGTCTAATGCGCTGGCAGCCTGGAGCTCATGTTGGTATTGGAACCAATAAAACACTTTATGCCCTAGAGGATGGTACTGTCAGATTCACCAAGGAGGTGTACATTCCTCTGCCACGAAGTGCTGAAGCTAGAGAAGTGATCCCAAAACTTCCCAAGGGTGCTGTTTTGTACAAGACCTTTATTAATGTCATTCCTGTAAAACAGGAGAATAAATTTAAACTAGTGGAAATGGTATAATAAACACTTTCTTCAACTTCAGTTTGATGTAGATTCTTAAACCAGACTGGTAAACCACCCTCAAATATTTTGATGGTCTCCTTTCAAGTGTGTCtaaaaattttgaaatatttaatttctttttatttgtacagtcatgttaaattctaataaacatgttttcctACCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02899 RP-L27, MRPL27, rpmA; large subunit ribosomal protein L27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128342 lncRNA upstream 405736 8875115 ~ 8875455 (+) True G86758
TU128340 lncRNA upstream 407646 8873327 ~ 8873545 (+) True G86756
TU128273 lncRNA upstream 595074 8682389 ~ 8686117 (+) True G86713
TU128123 lncRNA upstream 936223 8344669 ~ 8344968 (+) True G86593
TU128088 lncRNA upstream 989129 8291843 ~ 8292062 (+) True G86577
TU128592 lncRNA downstream 15190 9298270 ~ 9298849 (+) False pkd1b
TU128622 lncRNA downstream 198505 9481585 ~ 9485156 (+) False G86943
TU128623 lncRNA downstream 198505 9481585 ~ 9487179 (+) True G86943
TU128656 lncRNA downstream 313213 9596293 ~ 9600682 (+) True G86959
TU128658 lncRNA downstream 313213 9596293 ~ 9600682 (+) False G86959
XM_043253365.1 mRNA upstream 39699 9118929 ~ 9241492 (+) True ca10a
XM_043253304.1 mRNA upstream 338158 8896223 ~ 8943033 (+) False caskin2
XM_043253287.1 mRNA downstream 2583 9285663 ~ 9306831 (+) True pkd1b
XM_043253359.1 mRNA downstream 215496 9498576 ~ 9521662 (+) True wnt3
XM_043253309.1 mRNA downstream 276600 9559680 ~ 9575720 (+) False hdlbpb
XM_043253310.1 mRNA downstream 276979 9560059 ~ 9575720 (+) True hdlbpb
XM_043253295.1 mRNA downstream 339723 9622803 ~ 9635117 (+) True polr2a
XR_006252198.1 other upstream 428742 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1921 other upstream 575860 8705260 ~ 8705331 (+) True trnaq-cug_20
TU127672 other upstream 1437108 7815823 ~ 7844083 (+) False LOC122355675
TU127500 other upstream 1972962 7307924 ~ 7308229 (+) True G86143
TU127497 other upstream 1976343 7303138 ~ 7304848 (+) False G86142
TU128728 other downstream 474193 9757273 ~ 9759461 (+) False LOC122355274
TU128819 other downstream 588584 9871664 ~ 9873895 (+) False LOC122355252
TU128881 other downstream 1198535 10481615 ~ 10487341 (+) False LOC122355192
TU128882 other downstream 1204540 10487620 ~ 10491172 (+) False LOC122355192
XR_006252209.1 other downstream 1259149 10542229 ~ 10581755 (+) False svila

Expression Profile