RNA id: XM_043253419.1


Basic Information

Item Value
RNA id XM_043253419.1
length 3239
RNA type mRNA
GC content 0.47
exon number 5
gene id foxn2b
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10900253 ~ 10915884 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGGGGTACGGAAGCGTTGCCGTGCGGCGTGATCTCCGCGCTGCGTGGATGGAGGAAGCAGCTGCTGATCTTTTGACACAGCGCGAGCGAAAGGCTACTGCATGAAAGCACGGGAGCTTTGTCGTCGGACGCGACAGTAGAATGCACGAATACCCTCCTGGTTTGATGGGTCCGATAATTGGGATGTCTCCAGATAAGAAAGCCGAATCTCCCGGAGCGCAGGGCGTGTGTGGAGCTGGGACTCTACCTGAAGCAGAGAGCGCTTCCAGTCCCATGGCTACCAGTCTGGACCAGATTGGTCGGGCTGGAGCATTGAGTGTGGTGGCGGGCGAGTCTGAAGATGATGAACTAACCAACCTGAACTGGCTTCATGAGAACTTGCTGCAGAACTTCACGCTCGGAGGCGAAGCGCAACCCATCAACAGTCCGCTGTTTGACATCGAGGGAGGTGGTGGGTCACCACACAGCAACACCGCCTCGTCCACCTCCTCCATCTCTGCGGGAAGCGAGAGAGATCCTTACAAGTCAAAGCctcctttctctttttccttacTGATATACATGGCTATCGAACAGTCGCCCAGCAAATCTCTCCCAGTGAAGGACATCTACGGCTGGATCCTCAAACATTTTCCATATTTCTCCAGCGCCCCTACTGGCTGGAAGAACTCAGTGCGCCATAATCTGTCCCTCAACAAGTGCTTCCGCAAAGTAGAGCGAAGCATAGGAAAGACCAATGGGAAAGGCTCTCTGTGGTGCGTTCACCCCGAGTTCCGGCCCATGCTGATGCAAGCCCTGAAGAAACAGCACTTCCCGAATGCACATGCCTTCTGCACTCCTCCTGCCTCCCCTCCTAGTGCCTCGTCTCCTCCTCATCACCTTTTCACATCCGAGCAGGGCTGTGCCCTAAAAGACCCGGATGATCAAGAAGGACCCATAGATCTCTCCCGAAGGGACCTGGTGGTTGTGAGTCGGGATCCGAAGCAGGATCACAACTACAGCAGCACCCCTGTCCCACCCTGCCCTCGCCAGATGCCTCCTTCACAGCCGGTCAACTTCAGCCTGGCTCTACACCACGATCAGGAGAGAGGAGGCCGGGCCCGATGGCCGCGCAGCCCTCTACAGGGTCCGCTTTTAGGAAAGAGGAGCAGAAGAGATTCTCGTCCAGACGTAGACGAGGAGCTCAAGGAGGCGGCCGGCTCGCTCCTGCATCTGGCCGGCATTCGCACCAGTTTAGTCGCCTCAAGACGCAAGAGCAGGAAACTCAGTAGGAAATGAACCCCTATTCCGTAACTCCATCCTGTGGCCTGCCCAACCTCTCTCTTCTGGTTTGGTCTATCTTCCTTCTTGTTTGTAATTGTTGGggtgttttctttcctttcgTCTTTTTAACTGGGATGACGTTCCCGGACCACTCATCAAACATGGCAATACAAACACAGGAGAGAAAAGCCATactgacatattttatgtacagAAAAAGAAACCAATTTGGATGAACGGCCCACATCATTTGAGTTTAACAGtatgagagtaaaaaaaaattcaacgaGAGAGACactggtaagaaaaaaaaaaaaaaacacttcaagaTTTGCATGCTTCCACCTCTAAATCAACACAAACTTATTTATACGGGAAATGAATGCATGGATTTTACAAGCTCCCAAGATCTCTCACGCTTCTTAACTATAGACggaaaaagcttaaaaaaaaaaaaaaaaaagagagaaatatatgAAAGTGCCATTGATTTTGGATCATAATATAAACATGATACAAAAGAAGAAATGCAATAATTAGTTGACCTAAATAtctgtagttattttatttttgtactgctggtTTATATCTTGTGTGGTGGTGACGGCATGCCCCTGGGAGCCTTTTGCTGCCGCAGTTATGATGTCAAAACCATGTGACTCCTCCCGTGCATCCTGATTGGATCAATTTTGCATCCCCATCCTGACCACTATGACTGGAGAACAGCTTGAAGGAAACGGCTTTTTGTTGCATGCACATCAGCCTCAGTGTTTCTCAGATGCTAGCGATCAGGTGTTGTGCTATTCCACACGCACTGACTTGATTAAATCATTACCCGTGTGCATATTGCTTGCTTTCGGAGCATACTAAATAGCGGCCAATCAAAACAAGAACCTCTTACCTCTACTAAAGGATTTGAACCACTCTTTCCCTTTCCCGCTCCTTGACTTTACGTTGGCAAGTGTCACATCTGCCCAAATCAGGCCTTTGTCATCTTTTTCTTGGTTTAAACTGCGCGTGACGAAGCCTCCAGTAGAGGGGGCTCTGTGAAACGCCACATCTCTCCATTGCTGCTTTCGAGCTATGAGCTGGCGCCGCGCTGCTCCAGACCTCCAGAGAGTTCAGAAGAAACCAGAGACAATGTGAACTGCACAATAAATGCCCCTGCAAGCGGAGACAAAGACACTCTCCCATCGCTGCAGGTCACGGACGGTGCTGATCATGGGAGAAAGGATCACAGGAAGTGAAACAGAGTGGACAGTATATTGGGAGAACCAACTGAGATCTGTGCCATTAAAGAACTCTCTGGACTCCCGGCCATTTTTaacccagtttttttttttttttttttttttttctcgtccCCTTTGAGATCGCCAAAGTTGCTGCTCACAAAACTTGCCTGGCTGTGTGTTCCtaatagtttgtttgtttatgattgggtttttaagtgtttgtttgagGCTACATTAGGATTTTATATACCCGAGCATGTGAAATTGTAAACTATAACTGCCACTTGCCCCTTTACACTGGCAAACCAGAACGTTCTGTTCGAGTTGATTACTTTAAAACTGCCTGTCCTTGTGAAGCTCTTTCCCTGTCACTTTAACCATGGCTGCCAATTTGTCCCCTCCTAGCTGTACATAGTGCTAATACAGAATGCAAGTATTAATGCAGGGAGGGGAGCCAAGCAGTAGTTTTAGAATTTGAGGCCAATTCTGAAAACAGCTGCctatgaattattatattactattattattgttattattattaagataaGGTCCACTAACTGAGTTGCCACTTCCCCATCAATTCTGTCATGTTCTTCTGCCAAATGTGGCAGCTGAACctgatttttgattttgtaaGCTAACCTCTGTTAATAAAAGgtttataaagtttatttttgccAAAGATATGCAATTGTTGCATTATATATGGtattaaagaataaaagagttttttctttta

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129351 lncRNA downstream 4106 10895841 ~ 10896147 (-) True G87406
XR_006252171.1 lncRNA downstream 5536 10868848 ~ 10894717 (-) True LOC122355137
TU129314 lncRNA downstream 35657 10816561 ~ 10864596 (-) False G87376
TU129316 lncRNA downstream 35657 10817958 ~ 10864596 (-) True G87376
TU129332 lncRNA downstream 95515 10793063 ~ 10804738 (-) True G87388
TU129382 lncRNA upstream 89124 11005008 ~ 11006938 (-) False cript
TU129386 lncRNA upstream 155365 11071249 ~ 11071765 (-) True G87429
TU129411 lncRNA upstream 193012 11108896 ~ 11165039 (-) True G87449
TU129412 lncRNA upstream 208563 11124447 ~ 11126279 (-) True G87450
TU129359 lncRNA upstream 343133 11259017 ~ 11298534 (-) True G87409
XM_043253136.1 mRNA downstream 286751 10610648 ~ 10613502 (-) True chac2
XM_043254356.1 mRNA downstream 755524 10138438 ~ 10144729 (-) True LOC122355804
XM_043253390.1 mRNA downstream 1094743 9788025 ~ 9805510 (-) True LOC122355287
XM_043253367.1 mRNA downstream 1144206 9743392 ~ 9756047 (-) False LOC122355272
XM_043253366.1 mRNA downstream 1144206 9743392 ~ 9756047 (-) True LOC122355272
XM_043253414.1 mRNA upstream 2895 10918779 ~ 10931157 (-) False fbxo11b
XM_043253416.1 mRNA upstream 2895 10918779 ~ 10931157 (-) False fbxo11b
XM_043253417.1 mRNA upstream 2895 10918779 ~ 10931157 (-) True fbxo11b
XM_043254470.1 mRNA upstream 15978 10931862 ~ 10938013 (-) True msh2
XM_043253850.1 mRNA upstream 69158 10985042 ~ 10996581 (-) False socs5a
XR_006252200.1 other downstream 1410941 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 1410941 9484946 ~ 9489312 (-) False ormdl3
TU128628 other downstream 1410963 9481559 ~ 9489290 (-) False ormdl3
TU128627 other downstream 1410963 9481630 ~ 9489290 (-) False ormdl3
TU128530 other downstream 2022141 8875617 ~ 8878112 (-) True LOC122355288
TU129388 other upstream 127004 11042888 ~ 11045882 (-) True LOC122355648
TU129464 other upstream 405539 11321423 ~ 11322603 (-) True G87489
TU129586 other upstream 916995 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 1033387 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 1733499 12649383 ~ 12675472 (-) False prr15lb

Expression Profile