RNA id: XM_043253439.1


Basic Information

Item Value
RNA id XM_043253439.1
length 7634
RNA type mRNA
GC content 0.50
exon number 43
gene id svila
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10523143 ~ 10582545 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cactctctcctaTTTTCCTCCTCTCTTTGGTCCTTCACAACCCCCTCCCTTTTTTCTAATCACTTTCTTTTCTTATCTGTCGTCCACtccttatttaattttttaccaaTATGTACCGGAACCCTTGGATCTCCAACTACATCAACCATGTCAAGTTGTGCCAAGGCTTCACAGGAGAAACGTCTCCTAAAGTTGGCAATACCAAACTACAACGGCGAGCTCTTAGCTTCCAGAAAGAGTTCTTGTTTGAAGAGAAAGACGAGGGAACTAACAAAGAATTACATGTCAGTCCGCTTGGAAGCACACCCAAGGtctcAGAATTAAGGAAACGTTTTGAGAGCATAAGCTCAAGCCAGAGTTGGGACATGAACAGGAAAGAGCGAAGTGCAAGACGCCTGGAGGGAATCGATAGTGACGTTCTCCAAAATCTCCCAGGCTGTGGCGGTCTAGTTACCAATCGACTGCTAGAGGAGGACACTCCGAGATATACTCGTGCAGCAGACACCTGTGATCCCTGTACAGTTTCTCTTCAGCACTATGGCAAAAATGACCCAAACTTCCCAAATCCGCACAGTACAGAGGTTCAGTCTAGAACCCACACGGTCCAACCGGAGACTGTCTACAGCACTGGCTCCACTCATATGGGAGAGCTGGACTCTAAGGCTGAGAGGATTGCACGCTACAAGGCAGAACGGCGCCGTCAGCTAGCAGAGCGCTACGGCATCTCTCTGGATCAGGAGACCGAGACCGACTATGCGGCTCGCTACCCCAAAACAACCAGAGAGCCCGACGGCTCGGACCGACAACATAGGTCAAAGGCAGAAGGTGGAGATGGAGTGGAGCATAGTGCTTACACCCCCAGCTATCATGCAGACAGGTCCAGCTCACACATTCACAGCGATCCAGAGTACATCTCAGAGCGTGAGAGGTTGATGAATCTCGAGAACCAGAGGAGGGCACATGAGCGGGATAGATTACATGGAGGTGGAGGGGTTGCCCCTGACCCATCTGCATATATGGATGTGTCTGGGTCTGCCAGGGTCCCGGGGAAGGAACCTGGGGCGATGGGGGTTCCCAGCTCACCTAATGCAGGTCAAAGGACCATGATGCCATCTCCAAAACAGGGAGCATCTCCTGGTGATCTGTTTATTGAGCAGCAGGCTCACAACATCCTCCAAAGACACGGCTCCTGTAGCCAGTCAACAAACCAGTGGTCACTTCAGACTGACTCAGAAGGAGACACCCTCTCTCCAATCAACTGGCCCTCCAGAATCCGAGTTAGAGAGAGACTGGCCCGTGACGAGCCGTTTCACAGGGGTCAAACAGCAGAAGGACCTGCATTCAACCAGATTCCCCAATCATACCCTCGATATCACCCTCACAGTCGGAATGTCCCTGATTCGGCTCCAGCCAAACAGCGGCTGACCCACCCTGGACTAGAGGAACGCCATGACCTGGGGTGCCAGAGCTACTTCTCCATGGGCAGCGAATCCGGTTCAAGGCATAAACAAGAGATTCAAGAAGTGCTTGAAACAGAGGGAAAAAAGGATGTGAGGACAGTGGGGCTCTTGCGTAGCAGGAAGGCAGTTTTACCTTCTGAAATTCGTCGGAAAGAACGGAGCACTGAAGACCCGTGCCAAGGAAGTACCGACAATGTAGAGGTAAACCCTGCCATCAGTCGGCACTCGAGGGAGGATATTGCAGATGACCCCAGAGTGCGCCGTGGAGGTCAGTCAAGACGGGAAGTTTACACACAGCATGTGTCCCGACTTCAGGCCTCAGAGTCTATGCAAGCAAGAGCTCGAGAGGCCCATAGAAGGGCTAATGTTGGCTGCTACGCCCCAGTCCAGACCTCCAGTGGGAGATGTATGCCAAAACCTCTAGATACTGGAAATGTCCAACAGAATGCCATCCAGAACCCAATCAGAGAGCCTGCCCCTCAGGAGAAAGTGCCTAATGGGGATCACCTATCCCACGATGCAAGGGTTTCAGTTGCTCAACTCCGCCACACCTACCTGGAAAGTGTTGCGAGTCCCCGGAAAGCCGAACTGTCTCATCTAAGCCCTGAGCCACTGAGCCCTGAAgGGGATGAAGAGAAGTTGGATGAGAGAGCAAAGCTGAGTGTTGCCGCAAAGCGCTCTCTTTTCAGGGAGCTCGAAAAGACTTCAGATGGTTCAGTTTTGAAGGCATGGAGCCGTAACGCTGCTGTTGAGCGCAGGCTGAGGAGAGGTCAGGATCGCTCTCGGACTCAGCCTGTCACCTCAGAGGAAGTGGTCATCGCTGCTACTGTTCCTGGCCATTTGTCACAGTCCGTGACTGTACAAACCTCTGTAGCGCGTGTTCCTAGTCCCACTCTAGTCAGCAGCTCTGTGACCAAATCCAGTTTGCAGGCATCATCTCAGCAGAGCTGCATGGTGAGGGAGCAGGCCAGAGAGGTTCGGCTGGCTCAGGAGGCAGTGGAGACGGATCGAACCCGCCATGCATCTCCGGGGGAGGATGGTCAAGAGGAGCCAGACCTTTCCACGCTCACTCTGGCAGAGAAGATGGCACTCTTCAACCGCCTGGCACAGCCGTCCAGCCACGGTCCTCGGGCAAGGGGAGAAACTCGGTCACGTAGAAGTAATGCCCGCTACCAGACTCAACCAATCACACTAGGAGAGGTTGAACAAGATGACTCTGATTCTGAGCTGTTTGACGAGGAATCGGAGTTCTCAGAGCTTCTGAGCGATCTGGAACATGTGAGGATACCCGAGTCCTCTAGAACCCTACAGCCTGCAGGTGGAGCTCGTTTCGCCTCCACTTCCACCTCGGCCCTGAGATCCTCGACCGTTTCCACTGAACATGCTGGTGACATCCACCTGACCATGTCCAATGTATCTGGCCCTGCTTACTATGAGCAGACCCTCTCTCCACCTTACCAACCTCAAACTGTTCATCAGAGCTCGGATGTGTTCCCAGTGGCCCAAGGAGAAAAGCAGTTACTGAACATGGGGAAGAGGAAGCTTCCCTCTCCAGAGAGCATGAAACAGACACCACACGCTCAACCGGCCAGAGACTGGGAGGAGTATAAAGGGCACAACGAGGCTCTGGTGACCCCTAAAGACCCTTCAGAAACAGATGGAGAGCACAAGTTAAAGGCAGCCATATCAGACCTTCCTGTGCACACAGCCGCAGTacgtgcagcagcagcagctgtatCGCAGGGCTCATCCTCTTTACGGAGCGGCTCGCTCGCACTGCACGCGCACGCGGAGTCCGCCGGACACCTCTCGGAGGACAGCAGGAGAGAAGACGAGCAGGAGACTGACTTTAAAACGGAGGACGGAGACAAGCTCTCAAACATCATGTCTGCCAGACAGATGTCCATCAAAGACAGGCTGGCTCTGTTGAAGAAGAGTGGGGAGGAAGACTGGAGGaacaggataaataaaaaacaggatGTGGTGAAGGTTGCTGTGTCTGAAAGACACGCCCAGCTATGGGAAGTGGAGCAAAGCTTCAAGAAGAAGGATGATGGGATGATGATAGATGACTTTGCCGTGTCTGATCAACTTTGGGATCCTgtcttttcctcctccttttcgTGTGCCTCTGAACCACTGGATCAAATAGCAATCCTCCCCAAGGCTACCCCCCTGCCCGTGCAGGTGGATGAGCGTCACCCCTGGAGACGGAAGAAGATGGGAAATGAGGCGGTGGAGAGTCAGCAGATTGAGAGAATCGAGATGTCTATTCAGGAACGCAAGCAGCTCATCAACGCACAAGAGGATGCCTGGAAGGTCAAAGGTTACAGAGCATCCAATGACTCCACTCAGTTTACAGTGGCTGGACGTATGGTTAAAAAAGGTCTGGCAGCCCCCTCTGTTCTCACAAATCCAGTGCTGTCCCCCCTGTCCTCTAAAAACAAGAATTCCTCCCATACCATCTCAAAGCCACATGAAGAGATAGAAGTCAAACAGGACATGAGGGTGGAGTCAGACAAGAAGCTGGAAAAGTTGGAGTCATTTTTGGGTCGGCTCAATAGTAAGGTTTCAGGACTTCAGGAGTCCACGATTGCAGTCACAGAGAAGTCTGTTAAAGAGGTCATGACTGTGGATGATGAGATATTCAATAAGTTTTATAGACACACAGAGGATATGGCCAAGATCAGTAGCAGGGTGGAAATCAATGATGATTTTGATGCTATTTTTGGAGTGCAGTTGCCCAGgttgaCCTCAGACATGGTGCAGCACAAACGTGCAGTACGGCCAACCAGAAATGTTCAGTCATCCAAAAACCCCCTGAAAATGCTGGCTGTTCGGGAGGACATTAGACACGAGTACACAGAACAGAGACTGAATATCGGCCTTCTGGAGAGCAAGAGGATGAAACAGGAAAAGATGAATAAGAACAGCGGTTTCTCTGAGGTTGCTCTTGCCGGATTGGCAAGTAAGGAAAACTTCAGCAGTGTGAGTCTGCGAAGTGTGAATGCATCTGAGCAGAGTTCCAACAACAGTGCCATGCCCTATAAAAAACTCATGCTCATTCAGGTCAAAGGACGACGCCATGTCCAGACCAGACTGGTTGAGCCCAGAGCTTCCTCTTTGAACAGTGGTGACTGCTTCCTTTTGATCACACCTCATTATTGCTTCATCTGGATTGGAGAGTTTGCAAATGTTATTGAGAAGGCCAAAGCTGCAGAGTTAGCAACGTTCGTTCAGACCAAGCATGACCTGGGATGCAGAGCCTCGTATGTGCAGACCATTGAGGAAGGTGCCAACACTCACACTCATGCTGCCAAAGAGTTTTGGAAGATTCTTGGCGGCCAAGCCAGTTATCAAACCGCTGGAACTCCAGAAGAAGATGAGTTTTATGAGAGTGCTGTTGTAGAAACCAACTGTATCTACAGACTCATGGAGGATAAACTTGTTCCTGAAGACGACTACTGGGGACGGGTTCCTCGCTGCTCCATGCTTAACCCTAAAGAAGTGCTGGTGTTTGATTTTGGTAGCGAGGTCTATGTATGGCATGGTAAGGAGGTGACGCTGACGCAGAGAAAAGTGGCATTTCAGCTGGCAAAGCACTTGTGGAATGGCACCTTTGACTACACCAACTGTGATATTAATCCTCTGGACCCTGGAGAGTGCAATGCACTTATACCCAGGAAAGGCCAGGGACGACCAGACTGGGCTGTGTTTGGCAGGTTAACTCAGCACAATGAGACTATTCTTTTCAAAGAGAAGTTTTTGGACTGGAGTGACTCCAAGAAATCCACTAAGAAGAATGGCGACTCGCATGTTGTTGAAAACAAGgAGCATCGTGGTGGGGAATGTCGGCCTTATGATGCATCACTGATGTTGACGATGGTACGAATGCCGGTCAAGACCGTTCTGGATGGGGTCGATGTTGGACGAGGTTATGGATTGGTGGAAGGTGACGAGGGGCGTAACTTTGAGATCAGCACATTATCTGTTGATGTCTGGCACATTCTAGAGTTTGACTACAGTCGTCTACCCAAACAGAGCATCGGTCAGTTCCATGAAGGAGACACATATGTGGTCAAATGGAAGTACATGATCAGTACAGCAGttGGCAAGAGACTGCATTCAGAACGGATCATCGGTCCAGGGAAGGAGAAATGCTGTTATTTCTTCTGGCAGGGTCGCAACTCCACTGTGAATGAAAAGGGAACCTCAGCACTTATGACTGTAGAGCTGGATGAGGAGAGGGGTGCTCAGGTCCAGGTACAGCAGGGAAAGGAGCCTCCTTGTTTCTTACAGTGCTTCAATGGAGGAATGATTGTTCATGCTggaaagagagaagaggaggaagaaaatgcacaaaatGACTGGCGTTTATACTGTGTGAGAGGAGAGAAGCCCATAGAGGGCCATCTGCTAGAGGTTGTGTGCCACTGCAGCAGCTTACGGTCTCGCACCTCTATGATCCTCCTGAACATCCCGAAAGCCAGCATGTACCTGTGGCATGGCTGCAAAGCACAGATGCACACACGAGATGTGGGTCGTACCGCTGCCAACAAAATTAAAGAGCAGTGTCCTCTGGAGGCGGGGCTTCACAGCAGCAGCAAGGTGTCCATCCAGGAGTGTGATGAAGGAGCTGAACCACAGGGCTTCTGGGAGGCCTTGGGAAGAAGAGATCGAAAGGCGTATGACTGCATGCTGCAGGATCCGGGAAAGTTCAACTTCACTCCCCGGCTGTTCCAGTTAAGCAGCGCTTCAGGAGAGTTTGTGGCCGTGGAGTTTGTGTATCCATCCAGGGAACCAAATTTGGTCAACTCAATGCCTTTCCTACAGGAGGATTTGTATACAGCTACTCAGCCAGCCCTGTTTTTGGTGGATAATCACCATGAAGTGTACCTATGGCAGGGCTGGTGGCCTCAGGACAGTGAGAGCACTGGATCAGCTCGCATACGATGGGACTCTGACAGGAAGTGTGCCATGGAAACAGTACTCCAATATAGCAAAGGaaaaaatgAGAAGAACACTCCAAAATCATATCTAATCCACGCAGGACTTGAGCCTCTAACTTTCACTAACATGTTTCCCAGCTGGGAACACAGAGAGGACATCGCTGAGATCACAGAGAACGAGGCTGAAGTATGTAATCAGATCATTCTGGTTGAAGACGTCTTGACTAGACTCTGCAAGACCACTTACCCACTTGCTGATCTTCAAGCTCGTCCGCTACCAGAAGGAGTTGACCCTCTGCATCTAGAGATCTACCTTTCAGATGAGGACTTTGAGGGTGTAGGGGCTTCTGGGAAGAAAGCATTGGAAATGACAAGAAGTGAATACGAGGCACTACCAGGGTGGAAGCAAGTGAATGTGAAGAAAGCCAAAGGACTGTTTTAAAGGAACTGCTGATTGGGATTGAATCTGAAGTTGGAGACTTTCTCATTCCTTTTAATCAAGAAGGACAAATGCAAGTGAAGATCTACCTGTGTCAAACCACACAGGCCGGTGAAAAGGAGCAGGATGAAGGAGAAAAGACGCCAATGGGCAGGGGTTTAGCAGCCTCTTGTAGCacatttctctcattttctccttttttgtttgttttttttttatcagtgaaTTGTTGAATGTTTTGATTGCTCCCAGCATCTTTTCTTCCCATCGTTCTTGCGTTGCTGTGTCCACATAAAGCCAGTCACCGTCCAACATGCACAAGGCAGCCCTCATGCACTGCCCAGCTTTATATAAAGACCTAATAAATGAAATGCCTTGTAGTTATTATCTAATTGTAAGAAAGCTCAAAAGAGCACTTTATGTAAGTACGTTCATACCTGCTCTTATAAATGGCCTCAAGATGTGTTTAAACCTTCCAGATAGATGCTTGAACTTGAGAAccctatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgtgcatgGGAGAGTGTCTGTGAAACCatactctctgtgtgtgtgtgcgtgtctgaaTTCCTGTTCAAATAGGATCGAACGAAACCGTGGAATAAGAGAAAATGTCTTTCTATTCTGCATTGTATAGTGCCTTGCCTTTATGTACAGTTTATATAAAGACAGATGCTAGTCTGTATTTTGAAGACACATTTGTGATATCAATAAATAAGTGGTGCAAATAAACACTGAATAATGTAGATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128885 lncRNA upstream 42532 10497463 ~ 10499698 (+) False LOC122355633
TU128887 lncRNA upstream 45953 10495475 ~ 10496277 (+) False LOC122355192
XR_006252232.1 lncRNA upstream 443289 10078658 ~ 10098941 (+) False LOC122355662
TU128850 lncRNA upstream 444250 10078468 ~ 10097980 (+) True LOC122355662
TU128849 lncRNA upstream 581272 9960647 ~ 9960958 (+) True G87095
TU129023 lncRNA downstream 306873 10889418 ~ 10889625 (+) True G87181
XR_006252208.1 lncRNA downstream 333641 10916186 ~ 10919109 (+) True LOC122355308
TU129005 lncRNA downstream 336234 10918779 ~ 10939829 (+) False LOC122355308
XR_006252189.1 lncRNA downstream 372113 10954658 ~ 10955795 (+) True LOC122355200
TU129060 lncRNA downstream 398733 10981278 ~ 10987710 (+) True G87207
XM_043254025.1 mRNA upstream 25238 10507843 ~ 10516992 (+) True jcada
XM_043254143.1 mRNA upstream 43590 10497425 ~ 10498640 (+) True LOC122355633
XM_043253243.1 mRNA upstream 45975 10481492 ~ 10496255 (+) True LOC122355192
XM_043253339.1 mRNA upstream 645697 9883033 ~ 9896533 (+) False LOC122355255
XM_043253132.1 mRNA downstream 2537 10585082 ~ 10609150 (+) True psme4b
XM_043253133.1 mRNA downstream 2538 10585083 ~ 10609150 (+) False psme4b
XM_043253135.1 mRNA downstream 31648 10614193 ~ 10620486 (+) True asb3
XM_043253730.1 mRNA downstream 125353 10707898 ~ 10864445 (+) False nrxn1a
XM_043253719.1 mRNA downstream 125354 10707899 ~ 10864445 (+) False nrxn1a
TU128882 other upstream 51058 10487620 ~ 10491172 (+) False LOC122355192
TU128881 other upstream 54889 10481615 ~ 10487341 (+) False LOC122355192
TU128819 other upstream 668335 9871664 ~ 9873895 (+) False LOC122355252
TU128728 other upstream 782769 9757273 ~ 9759461 (+) False LOC122355274
XR_006252198.1 other upstream 1689781 8836448 ~ 8852449 (+) False arsg
unassigned_transcript_1922 other downstream 501732 11084277 ~ 11084370 (+) True trnai-uau_3
TU129235 other downstream 1112299 11694844 ~ 11701655 (+) True G87315
XR_006252241.1 other downstream 1354297 11936842 ~ 11944855 (+) False nbr1a
TU129954 other downstream 2150219 12732764 ~ 12737649 (+) True G87817
TU129966 other downstream 2177829 12760374 ~ 12762273 (+) False gall

Expression Profile