RNA id: XM_043253455.1


Basic Information

Item Value
RNA id XM_043253455.1
length 4681
RNA type mRNA
GC content 0.42
exon number 14
gene id tom1l2
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8056927 ~ 8069060 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGAGTCGTCCATAGGCGGGGCTTGAGTGTTTACTGTCTCATTGACTGTTAGTCGTTGGGTATGTTGACAAGATGGAGTTCTTGCTGGGAAACCCATACAGTACTCCGGTGGGACAGTGCATTGAAAGAGCCACAGATGGCTCACTACAAAGTGAAGACTGGACCTTGAATATGGAAATATGTGACATAATCAATGAAACAGAAGATGGGCCTAAAGATGCTATAAGAGCTGTGAAGAAGAGGCTTAACGGGAATAAAAACTACAGGGAGGTGATGCTAACGCTGACGGTTCTTGAGACATGTGTAAAGAACTGTGGGTACCGGTTCCACGCACTTGTCACCACCCGGGACTTTATTGATGGCGTTTTGGTGAAAATCATATCTCCAAAAAATAACCCACCTGCCATAGTGCAGGACAAAGTACTAGCTTTGATACAGGCATGGGCAGATGCCTTCAGGAGTAGTCCAGATTTGACTGGAGTAGTCCACGTCTACGAAGAAATGAAGAGGAAGGGTATAGAGTTTCCTCGATCTGACTTGGAGACCTTGTCCCCCATTCACACACCACAACGGCAGCAAAGTGCTCCAGAGTTGGACCAGCAGAAATATAACGCCCCAGTCCAGCCCAAGCCGCAGCCTCACCCTGCCTCCGCTCCTCCTTTCTCTGCCCCCGTCACCCACACTTCTCCACAGATGCCCAATCTGCACATGTCTGGGCCCATTAACCCTTCCCCTGAACAGATTTGCAAGCTACGCAGTGAGCTCGACATTGTGCGTGGGAACACTAAGGTGATGTCGGAGATGTTGACCGAGATGGTTCCTGGTCAAGAGGATCCGTCCGATCATGAGCTTCTTCAGGAGTTGAATAGAACGTGCAGGGCCATGCAGCAGAGGATAGTTGAGCTCATCTCACGTGTGTCCAATGAGGAAGTCACAGAGGAGCTCCTGCATGTCAACGATGACCTCAACAACATCTTTCTACGATATGAGAGatacGAAAGATTCCGATCTGGCCGAACTGCTCAAGGCGTAAACAACGGGGTCTTGAATGAGGCGACGGAAGATAACCTGATTGATCTGGGACCAGGGTCTCCTGCAGTGGTCAGCCCCAGGATCAGTGCTACTCCTCCGTCCAGCTTGCCTCCTTCTGTGGCTCCGATTCGCTCCGCCTCACCAGTCACTCTCTCCTCCAGACTGGCAGGTTTGGATGTCGGTTCTGACAGTGTGAGCGGCACCTTGAGCTCTTTGACTACCTGTCAACCCCAAGATGACTTCGACACGTTTGCCCAGACCAGGACTAGCACCATACCTGAGAGGAAGAGTGCACCATTCGAAGACACAAAGGCTTCAAGTGGAGTGGCCCCGACTCTGGATGTCCGACAACAACACACTGGGAAAGGAGATGGAGAAGAGGGTGTGACAAGTGAAGAGTTTGACAAGTTTCTGGAGGAGAGAGCCAAAGCGGCAGAGATGGTGCCCACGCTGCCCACACCCCCGAGTGACGAGCTTTCTGCCGCCGCCGGAGCTTCCGCAAACGCGAgtaaaaaggcaggcaggtccGAGGACTCTCTCTTTGCCTTGTAGATAAGTGTCAGATCCTCTGGGGCGGCCCTGTGACGGGTCAGCCGCTTTGCAGATCTATTGGCgtctcctctttctcttcctgcTTCCTGCTTCTCCAGCACAGTCAACACTACCACAGCTGAAGTGATCAACCGTTTCATGATCTAGACATTTTCATAACGGACATTTTTCATACTCTACCAAGTTTTCATTCCATTGAAAATACTGTGTAAGATCCACTCATAACTCCCTCTAAAAGCATACCGTTCCTTGTGGATCCGAGAGTTCgatgtctattttttttattgatatttgtgGTATAAAGCAAGGAAGTTCTTGCAAAATCCAGATCCGGTCATGTCTAACTTTGTGTTCACTGTGGTCCTGCATGCAACAGCTGGATAATCCAATTTCTCTTTACTCAATGAATTATCTGTAAAGGGAGCtaatagttttttcttcttcttctttttttctagttttatttGCCTGATGATTTGCTTTAAAGGGATGTTATACATAggattatttattgtataatttccAATTAATACCTCTGGCGAGATGAGAGCTGATGGTAGCAGTTCAGCTGGcaaatttaagattttttgtaaattactaCCAGTTACTGAATAAGACGTTCAACTATTAGAGAGAGAAGTTTTAAACATAGTcgtaatttattcaaattataataCGTTTTGGTTTTGCTTAAAAGGGACAGAAGCGGaagattagttcacccaaaaatgttaattgtcgTTAATTACTCGCCCACATtttgctccaaacctgtaagatctTTGTTCTTCTTCGAGAcccaaattaagatatttttgctgaatcctgagagctctctgaccctcccatagacagcaGTGTACTGAACACGATCAAGGTCCAGAAATCATGGGAGAATCAGAGAGCTTCATCAAAAGTATCCTTAATTTGTGGTCTAAatatgaacgaaggtcttacggtTTTGGAATGGGCGAGTAGTTAATGACAGAATgaaaatttttggatgaactatccctttaactacATGGGTCGCATCAGAGGgaaaatgatattaatatttcactggatacttttaaatgcaattttactcGGCAAAACCGTCGCCTATTAGAAAGGATTAATAGGAACGAAAAGTgtgtatttcaatttaatttgcaCTGAAAGAATAATTCACCTCTTGGCTGTGTTAAAAGAGCTTTtgttcaaatatgaaatttaagcTGTCGTTCATTTTCAACGCTGTCTATTCCGAGGCCGAAAAAAACAAATGGAGTTTCCAGAGAGCTGATGGTGACTGCGAGGCAGTTTAAATTGGATTTTACCTCGCACAACTGCAGCAGAAGTGGTGTCGAGCTTAacgttgttgttattattgggAATGAAATGGATCTGCCTTAAAGAACTGGTTGCGGGTAGTTTAAGGTGCAGTCCACTAATGGTCATGTGACATTTGGTACTCTCATGTTTGCACATCAGAGATTTGATTTAGTGAGGTGAATGTGCTGATGTAATATCTTGGTTTGAGTGCCGTGTCTCGCTGTTGTGTTCATACTGTTTTGACGGACCAAATGTTTAACCTTAGCAAATAATTTTAAGCGTAGAGTCAACTAAGACGTATATTGCTTTTAAAACGTCCAGAGGAGTTTTAgttgtgtttgtatttgattttcttttttcgttCATATAGGTGAGCACAAATCGGAGGGACAGTGCAGTTCTGCATGgctaattattttatatgatttgtcACACTACACTAAATATGTATTATGAACCCCAGATCTATTGAGCGACTAAGTTTTGGACCGCTTGCGCTCACAGTTTCAGTTTGAAAACTGGGATTTTTGAGGATCGCCACCTTTGGCAGAATTATTGGGAGTTCATTATGCCGTGTTTGTGAATCGGAGCTGTTAGGACAATGTAAGGGAAACGGTTCAGGTGTCAGTGATATTTAGTCTGTTAGTTTGATGTTTTTGAGAAGAGCTAGAAAGAAATTTAAGGATAGCTGTAGCAGGGATGCAGCTTGATTATACACAAgcattaatactaaaatattatggCTACTGTGTATTTCTGTTGATAACAGGAGGTTTGAGGGACACGGTCACAACTGACTGGTTTCTTTCATGAGATCTGTATCTCCTTCTATATTACTAATATGTACACACTAAACTACACTAAAGTTTTACCTCCCATGGATGTTTGCCATCCcatttaaatgctgttgttaTTGTTCTTGACACTATCACTGAAATTTGTGGAAAAACACGTGATTTGAGCATCTACCTTGAATTAATTTTTCAGCAATCGTGCAATTTCATCACTTAATGCTGCACTAcggtttgatttatttgaaatggtttGAGCTGTAAATTAGTCTCAGTAATGTACAGTTTGAGAAAGCAgaacattttatcttttttttttttttttttcagaaaacagtATTGGTTACTGTATATTAGAATGAAGGGActgtaaagataaaaaaaaaatcatagattTGGagtttccacttttttttttttccaatgtagctggaatgaaaatatttgactGACTTAATGCAATCAGATAAAATAAATCCCCAGCATATGGTCAGGTTATGCCAATGTCTTTTGTACCATTGAGAGCATTTCTTTATAGGAAAGGcacttttcttctctttgatATGTATTTGGAgttgtgtgcgcgtgcgtgtgtgtgtgtgtgtgtgtctatgtatatgtgtgtgaacaACAGCTCCTGATATCCTGATGTCTGCTGCAGACACCATGTTTATTCTGTATTTACCAAGAGACAGAAAGGAGAGAATCTAGCTTTCTAAAATGACACATCTCTATAAAGAAAAGTGatactgcagtgtgtgtgtgtgtgtgtataagtaagtgagtgagtgagtgagtgaaggGATTGGATTAAGCTGTACTCTCCAGCCGGTGATCATTTCTGTGGTCAATCTTGGTTGTACAGATTGTACTGGTGTTGGTCTGTGTGCTTACCTGTTGTTATACCTCAAGCTGCTCTCTGTATTGTTTGATTCATGCATGTGTTGAACTCCAATAAAATATACCAAGATGGTGATATGTTACCAGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127922 lncRNA downstream 1896 8054768 ~ 8055031 (-) True G86458
TU127863 lncRNA downstream 165706 7890303 ~ 7891221 (-) True G86413
TU127862 lncRNA downstream 168681 7887966 ~ 7888246 (-) True G86412
TU127809 lncRNA downstream 210095 7846481 ~ 7846832 (-) True G86375
TU127784 lncRNA downstream 348733 7707860 ~ 7708194 (-) True G86357
TU128016 lncRNA upstream 42135 8111193 ~ 8112713 (-) True G86516
TU128010 lncRNA upstream 79689 8148747 ~ 8154173 (-) True G86513
TU127996 lncRNA upstream 118583 8187641 ~ 8188917 (-) False G86505
TU127998 lncRNA upstream 118583 8187641 ~ 8190285 (-) True G86505
TU128056 lncRNA upstream 129860 8198918 ~ 8199124 (-) True G86553
XM_043253564.1 mRNA downstream 159263 7892785 ~ 7897664 (-) False nptx2b
XM_043253563.1 mRNA downstream 159263 7892785 ~ 7897664 (-) True nptx2b
XM_043254380.1 mRNA downstream 170955 7868994 ~ 7885972 (-) False baiap2l1a
XM_043253456.1 mRNA upstream 274 8069332 ~ 8071638 (-) True atpaf2
XM_043253088.1 mRNA upstream 20423 8089481 ~ 8101898 (-) False tex2l
XM_043253087.1 mRNA upstream 20423 8089481 ~ 8101895 (-) True tex2l
XM_043253006.1 mRNA upstream 46332 8115390 ~ 8119810 (-) True bricd5
XM_043253024.1 mRNA upstream 51276 8120334 ~ 8122090 (-) True LOC122355067
TU127575 other downstream 668017 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 952709 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1385680 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1983495 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 2002574 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 279104 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 449177 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 449922 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 541494 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 613994 8683052 ~ 8687548 (-) False plbd1b

Expression Profile