RNA id: XM_043253456.1


Basic Information

Item Value
RNA id XM_043253456.1
length 1429
RNA type mRNA
GC content 0.41
exon number 8
gene id atpaf2
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8069332 ~ 8071638 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTGTGGGTCACAAACATCAGCTTCACGCTTTGGTTTCACGTTGCAGCATGCTGTGACATCTCTTGTCAGAGTATTTATCTGTTCTTATATAATTGAGTTAACCTTGATTATCTTTAATACTTGTGTTTTCATATTGCTGCTGAAACGTGAACGATGATTTGTCGAGTTAGCTGTAACGCCTGACCCCGCTTTCTAACCTTGGCTAAATTCTTCAGTACTCTAACATATATAGGAATACATAGCGTTCTAAGTGTATGATGTTACGGAATATTTGTAGGTATCAAAGGCAGTTTGGCCAGGTCATTTGGCCATTTTCTTTTCCCCAAGGGCAGCATGTTCCTAGTTTATTAACACCCCTACAAAAGGCAAGATATGCCAGTGCCACAACAGAGAGAAAGAAGTTCTACGAGAACGTCTCGATATCTCAAGGTGAAGGGGGCTTGTATGAAATAAACCTTGACAAGCGAAAGCTGAAGACTCCAGGTGGAAAGCTGTTCACAGTGCCCAATGAAGCTCTTGCCATAGCTGTTGCCACAGAGTGGGACTTTCAGAAGGACACGCTGAAGTTTTACACCATGCACTTAACCACCCTTTGCAACACAGCGCTTGATAACCCATCGCAAAGGACGAAGGAACAAATTATCTCAGCTGCTCTAAAGTTTTTGGAGACTGACACAATCTGTTACAGAGTAGAAGATCCTCCAGGTCTTGTAGAACTTCAGAGAAATGAATGGGACCCTGTAATGAACTGGATAGAACAAAGGTACAATGTTATAATTGGCTCGTCCACCAGTATAATGGGCCCTCAAATCCCAGAGGAGACAAAGGAGACATTTCGTCAACACCTCAATTCATACAATTTTTGGTCCCTGACAGGACTTGAGTATGTGATCACTCAGCTGAAATCACTGGTCTTGTCATTTGGGCTGATTGACAGACACCTAAGCGTGGAACAAGCGGTTCTTCTGTCCAGACTTGAGGAAGAATACCAGATCCAGCGATGGGGAAATGTGGAATGGGTCCATGATTATGACATGTATGAGTTGCGAGCACGAACAGCTGCTGGTGCAATGTTTGTGTATCTGTCTTCTGAAAGCACAGCTGTCAAGAGAAAAATTTTACAGGACTGATTAGGCCAAAAAGGCACTGTTTGAgactgggaaaaaaatgtgatctttgttttctttttacagcaAGCTGCAGTGACACCAGTTTCCAGTTACATGCTGTTTCTGTTTAGTTATGTTTTGAGCAATAATATAGATGTCTGAGGTCATGATATGTATTGTTAGTTTCAACAGCTGCCAAACGGAAAGACTGTACATACAAAATCTCtgaattttaatgacaaaactgTAAACTGTTCAATTAATATGTTGAAgatcaaaattacattttgataaattgTAATCATATGCACATCTAAA

Function

GO:

id name namespace
GO:0043461 proton-transporting ATP synthase complex assembly biological_process

KEGG:

id description
K07556 ATPeAF2, ATPAF2, ATP12; ATP synthase mitochondrial F1 complex assembly factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127922 lncRNA downstream 14301 8054768 ~ 8055031 (-) True G86458
TU127863 lncRNA downstream 178111 7890303 ~ 7891221 (-) True G86413
TU127862 lncRNA downstream 181086 7887966 ~ 7888246 (-) True G86412
TU127809 lncRNA downstream 222500 7846481 ~ 7846832 (-) True G86375
TU127784 lncRNA downstream 361138 7707860 ~ 7708194 (-) True G86357
TU128016 lncRNA upstream 39555 8111193 ~ 8112713 (-) True G86516
TU128010 lncRNA upstream 77109 8148747 ~ 8154173 (-) True G86513
TU127996 lncRNA upstream 116003 8187641 ~ 8188917 (-) False G86505
TU127998 lncRNA upstream 116003 8187641 ~ 8190285 (-) True G86505
TU128056 lncRNA upstream 127280 8198918 ~ 8199124 (-) True G86553
XM_043253452.1 mRNA downstream 272 8056927 ~ 8069060 (-) False tom1l2
XM_043253454.1 mRNA downstream 273 8056927 ~ 8069059 (-) False tom1l2
XM_043253451.1 mRNA downstream 273 8056927 ~ 8069059 (-) True tom1l2
XM_043253455.1 mRNA downstream 274 8056927 ~ 8069058 (-) False tom1l2
XM_043253453.1 mRNA downstream 274 8056927 ~ 8069058 (-) False tom1l2
XM_043253088.1 mRNA upstream 17843 8089481 ~ 8101898 (-) False tex2l
XM_043253087.1 mRNA upstream 17843 8089481 ~ 8101895 (-) True tex2l
XM_043253006.1 mRNA upstream 43752 8115390 ~ 8119810 (-) True bricd5
XM_043253024.1 mRNA upstream 48696 8120334 ~ 8122090 (-) True LOC122355067
XM_043253112.1 mRNA upstream 54445 8126083 ~ 8129019 (-) True zdhhc4
TU127575 other downstream 680422 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 965114 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1398085 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1995900 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 2014979 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 276524 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 446597 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 447342 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 538914 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 611414 8683052 ~ 8687548 (-) False plbd1b

Expression Profile