RNA id: XM_043253457.1


Basic Information

Item Value
RNA id XM_043253457.1
length 2870
RNA type mRNA
GC content 0.44
exon number 12
gene id papss2b
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7747592 ~ 7754731 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATCAGCGCACGTTGATCTGATGGTGGGAGGATTTCAGGAAGAGCGCTGAGTGCTACGTGTCCAACACGTCCTGACTCCCACCAACTTTACTTTTACTCCGTGAGCTCTCCAGGGTCTCGTCTTTAGAAAGCCTCGGCGCATCATGTCTGGGATGAAAAAGCAAAGAACGGATCTGCAGAGAGCTACCAATGTTGTGTACCAGGCTCACCACGTGAGCAGAAGCAAGCGTGGCCAGGTGGTTGGGACCAGAGGCGGATTTCGTGGATGTACTGTCTGGCTGACAGGGCTGTCTGGTGCTGGAAAGACTACAATTGGATTTGCTCTTGAGGAATATCTAGTGTCTCATGCCATTCCTTGCTACTCGCTCGATGGTGACAATATTCGACACGGCCTGAATAAGAACTTGGGCTTCACGGCCACAGACAGGGAAGAGAACATCCGACGTATTGCTGAGGTGGCCAGATTGTTTGCTGATGCTGGACTGGTTTGCATCACCAGTTTCATTTCTCCATTTACAAAGGATCGAAACGACGCCAGGAAGATCCATGAAAGCGCAGGTCTGCCGTTCTTTGAGGTGTTTGTAAATGCCCCTCTGGAGCTGTGCGAGAGCAGAGACGTCAAAGGACTTTATAAAAAAGCCCGTGCTGGAGAGATTAAAGGTTTTACGGGAATAGACTCTGACTATGAGAAACCTGAAGCCCCTGAGCTtgtactgaagactggagaactCACTGTCAATGACTGCATTCAGCAGCTAGTGGATCTCTTGAAGGAACAGGATATTGTGCCCACTGGCGTGACAGAAGAAGTGAATGAGCTCTTTGTTCCTGAAAACAAGCTGGACCTGGTGCTGAGTGATGCCAATATACTCCCCACTTTAACCATCACAGAGCTGGATTTACAATGGATACAGGTTCTATCCGAGGGCTGGGCGACTCCACTGAGGGGATTTATGAGGGAGAGGGAATTCCTTCAAGTCTTGCACTTTGGAACTTTGCTTGATGgTGGAGTCATCAACATGTCTGTTCCCATTGTCCTGCCTGTATCCAAAGATGACAAAGAGAAGATGGATGGTTGTGCTGCTTTTGCCCTGGAGTTCAAAGGTCAAAAGGTGGCAATCATGCGCAACCCTGAGTTTTATGAGCATCGTAAAGAAGAGAGATGTGCCAGGCAGTGGGGGACAACATGTCCCAAACATCCATACATCAAGATGGTAATGGAGAGTGGTGATTGGCTGGCTGGTGGAGACCTGGAGGTGTTTGAGAGAATTAGGTGGAATGATGGTCTTGACCAGTACCGTCTCACTCCACGAGAGCTTAGACAGAAATTTAAAGAAATGAGAGCAGATGCCATTTTTGCATTCCAGTTGCGTAATCCTGTGCACAACGGCCACGCGCTCCTGATGCAGGACACTAAGCGTCATCTGTTAGAGCGAGGCTACAAAAAGCCTGTGCTTCTGCTGCATCCTCTGGGTGGCTGGACAAAAGAGGACGATGTACCTCTGGACTGGCGCATGAAACAGCATGCTGCTGTTTTGGATGAAGGAGTGCTGGATCCTGAAAACACCATTGTGGCCATTTTCCCCTCACCCATGATGTATGCTGGGCCTACAGAGGTGCAGTGGCATTGTCGAGCTAGGATGATTGCAGGGGCCAACTTTTACATTGTAGGACGAGACCCAGCTGGTATGCCCCATCCAGAGACAAAGAAGGACCTGTATGAGCCCACACATGGTGGAAAAGTGCTGACCATGGCACCAGGCCTTACCTCACTTGAGATCATTCCTTTCAGAGTTGCTGCATACAACAAAGTTCAGAAGGCCATGGACTTCTATGACAAGGAAAgACATGCTGAATTTGAGTTCATCTCTGGGACCAAAATGCGGAGCCTTGCCCGCAGCGGGGAGAACCCCCCGGATGGTTTCATGGCCCCAAAAGCGTGGAAAGTACTAGCTGAATACTACAGTTCTCTGCAGAAGGACCAGTGAACATGAGGCTGTGGACTGTATATGGAGACATACAGTGAAGCTCTTTATAACTTATTTCATTAGAACTGATAGAAATaggtttataaaaatatatgcattatatactACAGTCCTACATttgtagtaatattaaaaaaaatctttattagactcatttttagataaatgctATCTATATTTATGCCCTGCAAATTACTTCAAAATGCAGTATAATATCTTGTTCCCTGAGATCACCCtatataaaaagcatatatGGATTAAACTACACAGCTACTGCTGTTTCAATGGTGTTTTATACTTATAGTTGGATGAAGCAGATCAAAGTATGCCTGACAGTAATAGGACCGATATTTTTCCTACCTCAACTGGAGCTTTATTTGTTCGTCTTGGCAGTATTTTCACCAGAGGAGAACATCTTATATTCATTGTAGATACAGAATAATTCTATAACATTGTTTAtacgaattaaaaaaaacaaatgttcagtACTGGCAGCAGAGTATAACCTCAATCAAATGTATTTGACATAAACACAATATTGTCTCGCAGTGCACTTCAGTGCgccttttaatgtaaatgtggcATTGTTACGTTCCCAAATGAACAGGTTACTGTAAAAAAGCGATGGATGAATGTGAAAGGTTTGTGCTGAATGCATAAACATAAGACTCTTGAGGAATCCAATGTGAAGGAACAAGAGCATATTTATTGTCTTACCATTTTCTTAACGGACCAGCCtaacatatttattatcttACAGGAAATGTATTTACTTCCCTCTTTTTTGTACAAACTTGTgagatttacattttgtcatttcttaCAATATTTGATGTAATGAGCGTTGGGCAGGCATTCCAATAAACTTCCTTAAGACAAAA

Function

GO:

id name namespace
GO:0000103 sulfate assimilation biological_process
GO:0016310 phosphorylation biological_process
GO:0004781 sulfate adenylyltransferase (ATP) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004020 adenylylsulfate kinase activity molecular_function

KEGG:

id description
K13811 PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127784 lncRNA downstream 39398 7707860 ~ 7708194 (-) True G86357
TU127783 lncRNA downstream 42109 7705221 ~ 7705483 (-) True G86356
TU127781 lncRNA downstream 48578 7698665 ~ 7699014 (-) True G86354
TU127756 lncRNA downstream 111448 7634638 ~ 7636144 (-) True G86333
TU127757 lncRNA downstream 113036 7631396 ~ 7634556 (-) True G86334
TU127809 lncRNA upstream 91750 7846481 ~ 7846832 (-) True G86375
TU127862 lncRNA upstream 133235 7887966 ~ 7888246 (-) True G86412
TU127863 lncRNA upstream 135572 7890303 ~ 7891221 (-) True G86413
TU127922 lncRNA upstream 300037 8054768 ~ 8055031 (-) True G86458
TU128016 lncRNA upstream 356462 8111193 ~ 8112713 (-) True G86516
XM_043253670.1 mRNA downstream 12347 7720387 ~ 7735245 (-) False ptenb
XM_043253669.1 mRNA downstream 12347 7720387 ~ 7735245 (-) True ptenb
XM_043253709.1 mRNA downstream 84861 7651748 ~ 7662731 (-) True lipf
XM_043253708.1 mRNA downstream 85214 7651748 ~ 7662378 (-) False lipf
XM_043253706.1 mRNA downstream 100801 7636843 ~ 7646791 (-) True stambpl1
XM_043253460.1 mRNA upstream 126 7754857 ~ 7760517 (-) False minpp1b
XM_043253458.1 mRNA upstream 126 7754857 ~ 7758644 (-) True minpp1b
XM_043254280.1 mRNA upstream 23565 7778296 ~ 7789396 (-) False usp42
XM_043254278.1 mRNA upstream 23565 7778296 ~ 7789396 (-) True usp42
XM_043254282.1 mRNA upstream 34856 7789587 ~ 7795766 (-) True eif2ak1
TU127575 other downstream 358682 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 643374 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1076345 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1674160 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1693239 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 593431 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 763504 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 764249 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 855821 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 928321 8683052 ~ 8687548 (-) False plbd1b

Expression Profile