RNA id: XM_043253478.1


Basic Information

Item Value
RNA id XM_043253478.1
length 1607
RNA type mRNA
GC content 0.47
exon number 9
gene id vti1a
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13719671 ~ 13839456 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCCGTGACACCACCCGGAAGTGACGTGGGACATCAATAAAGAGCAGGCAGAAGCAACAGTGTCTAACGCAGCACAGTTCCTCtatcttttaatcttttaaaacaaaaatacaacatgTCTTCTGATTTCGAAGCGTACGAGCAGGACTTTGGCACCCTCACCGCGGAAATAACCAACAAAATCGGAAGAATACCCAAACTAGCCGGTGaggAGAAGACACAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAGTTGCTCGAGCAGATGGACCTGGAGGTTCGAGAGATTCCTATTCAGAGCCGAGGCATGTACAACAGCCGTCTGAAGAGCTACAAGCAAGAGATGGAGAAACTTGAGAAAGATTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTGGGGGAAGATGGGAGCTCCTCGGAGAGTCAGTTGATAAAGTTACGTGAGGAGAGAGCACATCTGTTGGACAACACAGAGAGGCTGGAAAGGTCATCTCGGAGGCTGGAAGCTGGCTACCAGATAGCGGTGGAAACCGAGCAAGTTGGACAGGAGATCCTCGCCAACCTGCACAGCGACCGCGAGAAGATCCAGAGATCCCGTGATCGGCTGAGAGAGACGGACGCCAACTTGGGCAAGAGCTCTCGGATCCTGACCGGCATGCTGAGAAGGATCATTCAGAATCGTATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTCTTGGCCATCTATTTCAATTTGCGAGGGCACTGATCTCCACTGACTGGCCCTAtgcgtgcatgtgtgagtgtgtacgAGCGTGTGTGTAAGATTAATAGTGACAAAAGCGTTGGGCTGGAGTAATTAGGACAAATTGTTCACATGAATCATTCCTGGTGGCCAGTGACAGGGGGCCTCTCCTCGCTGCTCTCGAGCGGAGCGGGACCGTTCTCATCCTCTCTCCCCTTATATTTATGCTGCGTCCATTACTTTTAAAACTTACCGACCCATAGAGAAACCCTGAGGACCGTGATGAGAACGTCAGATGGATGAAGAACATGAAGACGAGCGTCAACGTACGTCATAACCTGCTGTTTAtcgtttagttttctttttctgtaaagCTACTAGTAAAATCCCATCCAtcaggtgtatgtgtgtgtgtgtgtgagagccgTACACAAGGCAAGGCCCCCGGTGCAGTACCATTTAGCACATGGTGCAGaatcacacactacacacagcCCAAAGGTCACGCGCCCGTCTCTCAGTCCCCCTTCATCCAGGATTAGTAGCTTCTCACGCTGTTCCTCTAAGGTCAGCAAAGACCTCGCATGTGTTTAGTTAAACCAGCGGGACTGCTTTGAACAAGAAAACATCCATGTCCACTTTTACCTTTACTAATAAAATCTGACAGCATGATAGTAAATGTAGTCAGTCGtactaataagaaatgtttcttgtatttatttgtcGTTTCAGATGAattgtgatgtatttttttgctgtaactTCTTTTGATTTATCTGGAATTTGTTTTAGCCATTGGTGtttgacattaaaatgataTCATTTGTCTCTACCGTGCAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252233.1 lncRNA downstream 7130 13709055 ~ 13712541 (-) True LOC122355666
TU130373 lncRNA downstream 9404 13710066 ~ 13710267 (-) False LOC122355666
TU130329 lncRNA downstream 180288 13538691 ~ 13539383 (-) False entpd1
TU130281 lncRNA downstream 258426 13460145 ~ 13461245 (-) True G88035
TU130280 lncRNA downstream 259806 13458456 ~ 13459865 (-) True G88034
TU130511 lncRNA upstream 154204 13993660 ~ 13994186 (-) True G88205
TU130512 lncRNA upstream 154916 13994372 ~ 13995952 (-) True G88206
TU130548 lncRNA upstream 292463 14131919 ~ 14133138 (-) True G88233
TU130730 lncRNA upstream 558904 14398360 ~ 14398928 (-) True G88355
TU130769 lncRNA upstream 841461 14680917 ~ 14684300 (-) True G88384
XM_043253779.1 mRNA downstream 28331 13614147 ~ 13691340 (-) False tcf7l2
XM_043253781.1 mRNA downstream 28333 13611734 ~ 13691338 (-) False tcf7l2
XM_043253473.1 mRNA upstream 6717 13846173 ~ 13854773 (-) False acsl5
XM_043253472.1 mRNA upstream 6717 13846173 ~ 13854772 (-) True acsl5
XM_043253475.1 mRNA upstream 25370 13864826 ~ 13872555 (-) True tectb
XM_043253476.1 mRNA upstream 25374 13864830 ~ 13872555 (-) False tectb
XM_043253202.1 mRNA upstream 133426 13972882 ~ 13976511 (-) False srsf2a
XR_006252221.1 other downstream 28332 13611734 ~ 13691339 (-) False tcf7l2
XR_006252219.1 other downstream 28333 13611734 ~ 13691338 (-) False tcf7l2
XR_006252218.1 other downstream 28333 13611736 ~ 13691338 (-) False tcf7l2
XR_006252220.1 other downstream 28333 13614147 ~ 13691338 (-) False tcf7l2
TU130001 other downstream 966993 12751904 ~ 12752678 (-) True G87845
XR_006252179.1 other upstream 133426 13972882 ~ 13976511 (-) False srsf2a
XR_006252180.1 other upstream 133426 13972882 ~ 13976511 (-) False srsf2a
XR_006252178.1 other upstream 133426 13972882 ~ 13976511 (-) False srsf2a
XR_006252177.1 other upstream 133426 13972882 ~ 13976511 (-) False srsf2a
XR_006252176.1 other upstream 133426 13972882 ~ 13976511 (-) False srsf2a

Expression Profile