RNA id: TCONS_00009747


Basic Information

Item Value
RNA id TCONS_00009747
length 542
RNA type processed_transcript
GC content 0.43
exon number 2
gene id XLOC_004982
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 46883785 ~ 46937956 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCTGCACTGGAATGGACCGTGGCAAAGATGTGTGTTGCCATGGTAATTATTCACACTAAAACACTGGAAAAGAAGGCGCGCGAATGCTTGTGGGCGGGGCTTTGTAGCAGAAGGGGCCGGGACTTATTCCAGCTGGGCGGAGAACTGGATATCGAGCAGATTGAGAGGAACTGAGAAGCATTTCTTGTTGGATTATTATGGGATGTACGCTTCAGTAAGTGATGCAGGACACATGTAATCGACTCAGGGTGAAGCACATGGAGGACGTGATCCGAGCTCCGTGTGGCGCAAGAGAACACGCACACATTTAGATTAGCAGAGCCATTTGACATTATAAAAAAAGAGATACGACTCTgacgttcacacacacagacatacacacacgttAAAGGGCTTCAGATGTGTAACAGTAGTAATATCAGGTAATTCAGTTCCTCACTGGTGAAAACAAAGCTATTAGatctatttttgtctttttacatTGAATAACTACAGAAGTAAATGTACTTATTTCTCTACAATAAACAGCATTGTAATGTGT

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0031101 fin regeneration biological_process
GO:0048675 axon extension biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2495 Acts upstream of or within several processes, including axon extension; fin regeneration; and protein import into nucleus. Located in nucleus. Is expressed in Rohon-Beard neurons; head; regenerating fin; trigeminal sensory neurons; and trunk. Orthologous to human FAM53B (family with sequence similarity 53 member B).

Ensembl:

ensembl_id ENSDART00000134428

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009729 lncRNA upstream 221928 46683212 ~ 46693443 (+) True XLOC_004976
TCONS_00010774 lncRNA upstream 372182 46542671 ~ 46543189 (+) True XLOC_004970
TCONS_00011035 lncRNA upstream 683500 46188296 ~ 46231871 (+) True XLOC_004963
TCONS_00011034 lncRNA upstream 812951 46078647 ~ 46102420 (+) True XLOC_004962
TCONS_00010772 lncRNA upstream 861175 46046285 ~ 46054196 (+) True XLOC_004961
TCONS_00010775 lncRNA downstream 97775 47035721 ~ 47036420 (+) True XLOC_004984
TCONS_00011036 lncRNA downstream 642076 47580022 ~ 47580566 (+) True XLOC_004991
TCONS_00010776 lncRNA downstream 668925 47606871 ~ 47610330 (+) False XLOC_004992
TCONS_00010777 lncRNA downstream 670393 47608339 ~ 47610330 (+) True XLOC_004992
TCONS_00011038 lncRNA downstream 1390920 48328866 ~ 48330894 (+) False XLOC_005002
TCONS_00009744 mRNA upstream 34369 46869271 ~ 46881002 (+) True XLOC_004981
TCONS_00009742 mRNA upstream 46737 46841918 ~ 46868634 (+) False XLOC_004980
TCONS_00009743 mRNA upstream 47365 46855036 ~ 46868006 (+) True XLOC_004980
TCONS_00009741 mRNA upstream 79431 46791907 ~ 46835940 (+) True XLOC_004979
TCONS_00009740 mRNA upstream 151547 46745239 ~ 46763824 (+) True XLOC_004978
TCONS_00009748 mRNA downstream 22633 46960579 ~ 46985891 (+) False XLOC_004983
TCONS_00009749 mRNA downstream 29843 46967789 ~ 47042081 (+) True XLOC_004983
TCONS_00009750 mRNA downstream 106761 47044707 ~ 47072007 (+) False XLOC_004985
TCONS_00009751 mRNA downstream 113043 47050989 ~ 47072007 (+) True XLOC_004985
TCONS_00009752 mRNA downstream 143837 47081783 ~ 47115440 (+) True XLOC_004986
TCONS_00009724 other upstream 311816 46603441 ~ 46603555 (+) True XLOC_004973
TCONS_00009703 other upstream 2288364 44626890 ~ 44627007 (+) True XLOC_004951
TCONS_00009686 other upstream 5454737 41460518 ~ 41460634 (+) True XLOC_004935
TCONS_00009675 other upstream 6503689 40411566 ~ 40411682 (+) True XLOC_004927
TCONS_00009671 other upstream 7411693 39503564 ~ 39503678 (+) True XLOC_004924
TCONS_00009795 other downstream 1878214 48816160 ~ 48825502 (+) False XLOC_005016

Expression Profile

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