RNA id: XM_043253500.1


Basic Information

Item Value
RNA id XM_043253500.1
length 3451
RNA type mRNA
GC content 0.47
exon number 18
gene id aldh18a1
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13541318 ~ 13551229 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGTTGCGTAACTACGTGGATGAACGTCAACATGGCTGAATCCATGAGAGCAGCTGCCGAGAGTTGATGTGGCACTGAAGAGCATCGGCGGCAGTGAACTTGAGCTCAATAAAGCACGTTTATTTTGTAGATTAAGTTGCACAAATCAGGCCACCATGTATCTCCAGAAGATGTTCTCCTGTTCTCAGCTATTATCGAGACCAAATGCTCTTCAAACATTCAAAAGAGCTGCTTCAAAAGGCAAAATGCCGCTGGCACGGGCGCATGGTAAGTCATTTGCCCACCGCAGTGATCTGCGCCAGGCCAAAAGAATCGTTGTCAAGTTGGGGAGTGCTGTCGTGACCCGTGGCGACGAGTGCGGCCTTGCTTTGGGCCGACTCGCTTCAATTGTAGAACAGGTGGCCATGCTTCAGAATCAGGGCAGAGAGATGATGATCGTGACCAGTGGTGCTGTAGCGTTTGGAAAACAAAGGCTGAGGCACGAAATTCTTCTCTCACAGAGTGTCAGACAGGCCCTGCACTCAGGCCAGAATCAGCTCAAAGATATGtcACTTCCAGTCCTAGAGGCGAGAGCGTGTGCTGCTGCGGGACAAAGTGGACTTATGGCTCTGTATGAGGCTATGTTCACTCAATACAGCACCTGTACTGCCCAGATCCTGGTAACAAACCTGGACTTCCACGATGACCAGAAAAGACGGAACCTGAACAGCACTCTGCATGAGCTGCTGCGTATGAACATCGTGCCCATCATCAACACGAACGACGCTGTGGTGCCTCCCCCAGAGCCCAACAGTGACCTACAGGGGGTAAATGTTATCAGTATCAAGGATAACGATAGTCTTGCAGCGCGGCTTGCTGTGGAGATGAGGGCAGATCTTCTCATAGCTCTCTCTGATGTAGAAGGCCTTTATGACAGCCCACCAGGGTCAGACGATGCCAAGCTCCTGGACACATTTTACCCTGGGGACCAGCATTCCATAACCTATGGTACGAAGTCCAGGGTCGGCATTGGAGGAATGGAAGCTAAGGTTAAAGCTGCTCTCTGGGCTCTCCAAGGTGGGACGTCTGTTGTCATTGCTAACGGTACACACCCCAAAGTCACAGGTCACGTGATCACTGACATTGTTGAGGGCAAGAAAGTAGGAACCTTTTTCTCAGAGGTCAAGCCAGCTGGTCCCACGGTCGAGCAGCAGACAGAAATGGCTCGCTCTGCTGGCAGGACTCTTGCTTCCCTTGAACCAGAGCAGAGAAGTGACATCATCTGTGCATTGGCTGATCTCCTTACTGAGAGGAAAGATGAAATCTTATCTGCCAACAAAAAGGACATGGAGAATGCTGTCGGCACAGGTCGTCTGTCTCCGGCCATGTTAAAGCGACTTAGTTTGTCATCATCTAAACTGAACAGTCTGTCCATTGGTCTGCGTCAGATTGCAGTGTCCTCTCAGGACAGCGTTGGCAGGGTTCTGCGCAGGACAAGAGTGGCAAACAACCTGGAGCTGGAGCAGATCACTGTCCCCATAGGAGTACTGCTGGTTATCTTTGAGTCAAGGCCAGACTGCCTTCCTCAGGTTTCTGCTTTAGCCATTGCCAGTGGAAATGCTCTTTTGTTGAAAGGTGGCAAAGAGGCGGCCAACACAAATCGCATTCTGCATGAACTCGCTCAGGAGGCTTTGTCCATCCATGGAGTCAAAGACGCCATTCAGCTGGTGAGCACACGTGAAGAGGTGGAGGATCTGTGTCGTCTGGAGAAGATGATTGATCTGATCATTCCTCGTGGTTCCTCTCAGCTAGTCAGAGATATTCAGCGCGCGGCAAAGGGCATCCCTGTTCTTGGCCATAGTGAGGGGATCTGCCATGTTTATGTGGACCATGAGGCCAGTGTTGACAAAGCCATCAAGATCATACGAGACTCGAAATGCGACTACCCTGCAGCCTGTAATGCCATGGAAACCCTGCTGGTGCATCGAGAACTTCTCAGAACCCCATTGTTTGATCAGATCATCGACATGCTGAGGACAGAACATGTGAAGATCCACGCTGGCCCCAAGTTTGCATCGTACCTGACTTTCAGCCCGTCAGAGGTGAAGTCTCTACGCACTGAGTACGGGGATCTGGAGTGCTGCATCGAGGTTGTGGACAGTATGCAAGAGGCTGTTGATCACATTCATAAATATGGCAGTTCTCACACTGATGTTATTGTCACTGAAAATGAGGACACAGCAGAGCAGTTCCTTCAGCAATTAGATAGTGCCTGCGTCTTTTGGAATGCCAGCTCACGGTTCGCTGACGGATATCGTTTTGGTCTCGGCGCGGAGGTTGGCATCAGCACAGCCCGTATTCATGCCCGTGGGCCTGTGGGGTTAGAAGGGCTTCTCACTACCAAATGGGTCTTACGGGGCGAGGGCCACACAGCTGCAGATTTCTCTGAGCACGGCAGCATGACGTATCTGCACGAGAATCTTCCGGTGGCACAGGTTCTTCCTGGACGAAGAACCACCAGCTAGAGGCGTGAAGTAAAAACATCTACAGAATCAAAGTAAAGGCTCACCCACTTAAACCCTATTTAAAGACTCCCATCAGGCAGTGCATTTGGAGTATGTGTGAATGCAAGGAAATTATATGTGGATCAAGAGCTGTTCAGTGAACcaatactttttcattttcccAGATACACCCATTTTAGTCAAGCATGTCTTGTTCAGGAAGAACTTTTAGCTGTGGAAACGCGGAAGGGACATGCCACAAACAAGACGAGGGAATTTGCTTAAAGCTGTGGTCCATACGATTGTTTTtgtcatcgtttttttttttttttttgagcattacTGATCATGGCAGAAATAATGGCAGGAAAATAGGCCTCCCAAATTGCCCacgttatatatttatgtaatattaaatatgtgaaaATGCAGTATGAATTTCGATGTGAATTACATTTCCAGGCACAAATTGTAGCATTGATATCATTGTGCTGTACAcataaattcagctttaatgggacaaatatattgtttatttggcATAGTCATTgcataaaaactgtattaataaCGGAAATAGAATATTTTTCATGTGGCATAGTGCTAGTCACTTACAGTACaacataagaaaaaacattttttccagctgatcggtctatgcttttatttaaaagaaaacagaaaaccaaTCTTCCTGTTCATTacctctctttttcctttttttctgtgctCACTGCTTTTTAATCATGAATAATGTGCATACCTGTAGACATTTCTTTGTTACTGCTGTAAAATTCACTCGGGACGGGCAGCTTTTGTCCTGAACTGCTTCAAAAAGACCTCGTTATCTGTACTTTAAAGTGCTGTAACGCTCAACAAAATAGTGATGCTTAATAGTATGAAAAGTATTCCGAAGATGTTCAAAATTTTTGTATGTAGAataaatttcttttttgtacTTTCGAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006561 proline biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004349 glutamate 5-kinase activity molecular_function
GO:0004350 glutamate-5-semialdehyde dehydrogenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130321 lncRNA upstream 1307 13539789 ~ 13540023 (+) True G88063
TU130320 lncRNA upstream 3242 13536166 ~ 13538088 (+) True G88062
TU130250 lncRNA upstream 109771 13429413 ~ 13431559 (+) True G88010
TU130188 lncRNA upstream 157482 13348949 ~ 13383848 (+) True G87979
TU130338 lncRNA downstream 28849 13580078 ~ 13580291 (+) True G88079
TU130372 lncRNA downstream 158775 13710004 ~ 13710239 (+) True G88106
TU130377 lncRNA downstream 164355 13715584 ~ 13717132 (+) True G88111
TU130514 lncRNA downstream 477197 14028426 ~ 14090868 (+) True G88207
TU130541 lncRNA downstream 573083 14124312 ~ 14131677 (+) False stxbp4
XM_043253503.1 mRNA upstream 18005 13513594 ~ 13523325 (+) False slc35f3a
XM_043253505.1 mRNA upstream 18005 13515018 ~ 13523325 (+) False slc35f3a
XM_043253506.1 mRNA upstream 18005 13515029 ~ 13523325 (+) True slc35f3a
XM_043253060.1 mRNA upstream 29493 13507585 ~ 13511837 (+) True kcnk1a
XM_043254346.1 mRNA upstream 43493 13482058 ~ 13497837 (+) False thbs2b
XM_043253474.1 mRNA downstream 288254 13839483 ~ 13846089 (+) True zdhhc6
XM_043254361.1 mRNA downstream 304466 13855695 ~ 13864743 (+) True gucy2g
XM_043253507.1 mRNA downstream 321789 13873018 ~ 13894073 (+) False gpam
XM_043253508.1 mRNA downstream 322346 13873575 ~ 13894073 (+) False gpam
XM_043253509.1 mRNA downstream 325880 13877109 ~ 13894073 (+) True gpam
TU130259 other upstream 96415 13441943 ~ 13444915 (+) True G88016
TU129966 other upstream 779057 12760374 ~ 12762273 (+) False gall
TU129954 other upstream 803681 12732764 ~ 12737649 (+) True G87817
XR_006252241.1 other upstream 1596475 11936842 ~ 11944855 (+) False nbr1a
TU129235 other upstream 1839675 11694844 ~ 11701655 (+) True G87315
TU130341 other downstream 44565 13595794 ~ 13596348 (+) True G88082
TU130395 other downstream 311862 13863091 ~ 13863702 (+) False gucy2g
XR_006252211.1 other downstream 343132 13894361 ~ 13904627 (+) True LOC122355339
XR_006252175.1 other downstream 426951 13978180 ~ 13990754 (+) False rnf157
XR_006252174.1 other downstream 426951 13978180 ~ 13990717 (+) False rnf157

Expression Profile