RNA id: XM_043253547.1


Basic Information

Item Value
RNA id XM_043253547.1
length 4116
RNA type mRNA
GC content 0.45
exon number 11
gene id ercc4
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8325243 ~ 8331539 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCGTGACAGACATACACCAAGGAGGCACTGATTTTTCTTATGATGCGAAAATAGGCTTCCACGGTTAAGTTATGCTAAAAATATTcagtgcattttttatattaaaaaacggAAGCCATAAGCATCTGGAGTTTCATTTCATACACATTCATGCACGGTTAGGAGTGCGTCTCTTGTgaagttgtttgtgttttttgtgggAGTTCTACCCCCAGTACAGCAGGTGGCGCCGGCGTAACCGAACGTTAGAAACCCCGCGGCGTCACGTGACACGATAACGCCTTTTTGAAACACGAAGGCGAGCGAAACTTGCGTAATGTAAAAGAATATGATATAGCTCAAAAGTATAGCTTTTTGTTCGGTTCTGCGATTACGTGTGTGCTACCGGCAAGTATAGATATTAAATGGAAGCGCTGTACTTTAGTTCGTCCTGATAAAAAAAGCGGTAAAACTGCAAGACCGTTCATGTCATCCAGCAAAGCAGCTTCGGTCGCTCGTGAAGATGGCGAGCCCGCTGCTGGAGTACGAGACGGAGATGTTTCTGAGTTTGTTCAGCTCGGACGGCTTGCTGGTCACAGCCGAGGGGCTCGGGGTCGACCGTATTCTCTTACACTTCATGAGAGTCTATTCGGAGGAGGGCAGTCTGGTGCTCCTGTTAAACACGACCACTCCTGAACAGGAGTATTTTACAGAGCAGCTCCGCGCTGAAGGAGTAAGCCATCTTCCCCAGACTGTGACCAGCGATGTGCATAATAATGAAAGATATAACGTGTACACTAAAGGAGGAGTTCTCTTTGTGACCAGCCGCATCCTAGTGGTGGACTTCCTCACCGACCGAATTCCTGCTAACCTCATAACAGGAATCCTGGTGTATCGTGCGCATAAGATCATTGAGTCTTGTCAGGAGGCTTTCATTCTGAGACTTTATCGGCAGAAAAACAAGACCGGGTTCATCAAGGCCTTTACGGACAAGGCCACGTCCTTCTCTTCTGGCTTCTGTAAAGTCGAGCGTGTCATGAGAAACCTGTTTGTGAAGAAGCTCTTTCTTTGGCCAAgATTTCAAGCATCAGTGAACACAACGCTGGACAAACACAAGCCGGATGTGGTGGAGCTCCATGTGTCTCTGACTCCAGCGATGAGAGCCATTCAGAGCTCTATCCTGGACATCATGAACGCCTGCTTGAAAGAGCTGAAGCGCTACAATCCCACTCTGGAAGCAGAAGACCTCTCTCTGGAGAACAGCCTGGGCACTTCCTTTGAAAAAaCAATTCGCCATTATCTTGACCCATTGTGGCATCAGCTGGGGTCCAGGACCAAATCTCTCGTTCAGGACCTAAAGATTTTAAGAACCCTTCTTCTCTACCTCACGCAGTACGACTGTGTCACCTTCCTCAATCTGCTAGAGTCTTTAAGAACCAGCCAGAAAAGCTTCGGTAGCAATTCAGGTTGGTTATTCTTGGACTCGAGCACTTCAATGTTTGTAAATGCTCGCAGCCGCGTGTATTGCATGCGAGAGTCAAAGAAGAAACTAAAAGTTGGAGAGAACGACCAGAAACGAAGTGCTCTAGGCCCTCCGATAAGAGAGCTCGTGCTTGAGAAAAATCCAAAGTGGGAAGCGTTAACAGAGGTGCTACAagagattgagaaagaaaacagcagCTCCGAGCGTGAACCAGGCCGTGTGTTGATTTGCGCCAGTGATGACAGAACATGTGCTCAGCTGAAGGAATATATCCAAAAAGGAGCAGAGCACCTACTGAATCGCCTTTATTCACGCACCATTGGAAAAGAAGATCCTCAGCCTGATTTACTGAAGCTTGACAAAGGCTGGAGCAAGAAGGCCTCCGCTAAGAGCAAAGGGAAAAACGGgcggccaaaaaaaaaacaaaccgcCTCAAAGAAACCAACAAAGAATGACAGACCTTCAAGAGTCTCTCAGATGGAGAGGCAGGAAGACGGAGCTGAAAAGGACCTAATTGGAAACAGTGGAGATGAAGGAAGTTTggctgaagaggaggaggaggaggaagaagaagagattCTTCTTGATATTTCTTCCGATGACTACTACGGAATCCTTAAAGAGCCGTTGACTGTCATTCACCCTTTGAAGGGATGCAGCGACCCCTACAGTTTGACGCGGGTGTTGCACGAAGTCGACCccatgtttgttgttttgtatgaTGCAGAACTCAGTTTTGTGCGGCAACTTGAGATTTATAAAGCCAGCAGGCCAGGAAAACCTCTCCGtgtatattttcttatatatggAGGCTCGACAGAAGAACAGAGGTATCTTACAGTCTTGAGCAAGGAAAAACAAGCATTTGAGTACCTCATAAGggaAAAGGCCAGCATGGTCGTtccagaagagagagagggtaGGGAAGACACCAACCTAGATCTTGTCCGCAGTCAGGAACCTGCCAGTGCCGCCACCAACACCCGCAAAGCAGGGGGCCGTGAAGATGTTAAAGAGCCTCAGCGAATCATAGTTGACATGCGGGAGTTCCGCAGTGAGCTTCCTTCCCTCCTGCATCAACGGGGTCTCGACATTGAGCCCATCACCTTAGAGGTCGGCGACTACATATTGACTTCAGAGATCTGCGTGGAGCGCAAAAGCGTCAGCGATCTCATTGGGTCACTACAAAGCGGGCGTCTCTACACACAGTGCCTCTCTATGACTCGATTCTATCGCCGTCCGGTGCTGCTTATCGAGTTTGACCCCGCCAAGCCTTTCTCCCTCGTGGCCCGCAGTGATTTTCGTCAGGAGATTTCTGCCAGCGACGTCACATCTAAACTGACCCTCCTCACCCTCCATTTCCCCCGCCTGAGGCTGCTCTGGTGCCCGTCTCCCTACGTGACGGCAGAGCTGTTTCAGGAGCTCAAACGCGGCCGCCCGGAGCCCGACGCCGCCACAGCTCAGGCCGTTACTGCCGAATCAGAGACGGTGACGGAGTCAGCAGACCTGTACAACCCCGGACCTCACGACTTCTTGCTCCGCATGCCTGGAGTCAATGTGAAAAACTTCAAGAGCCTTGTAAAACACGCTTCCTGTCTGGCCGATCTTCTAACATTTAGTCAGGAAAAGCTCAGTGAGATCTTGGCCAGTGGTAGCAATGCCAGGCAGCTTTTCGAATTCCTACACAATCCTATGGATGTGGTGCCTGTTCAGAAAAACAAGCAGACATTGTAAAGATGAAAAGTATTGGCGTCGTAATCTCAGGTTTGGTAATTGTTCCTTGTCAAAAGGGATCGGTGTTCATATTTATTAGgaaatgtttgtattaaatgcagtgagtgaattattatatttatgaatatttaaagggataattcacccaaatcTGTCATTTAACTACtaaccttcatgtcattccaaaccttcgTTTATCGTTGGAACACAAATTTCTTGATGAATTctaagagctctctgaccctcccatAAACAGCATAGATCCTAACACAATCAACTGTAATTTCacaaagctatgagaatactttttgtgtacaaagaaaacaaaaataataacattttctaattttTATGGTGCCATTTTTGAAGAGTAACACATACGTAATAAACGCATGCAATGTTATGTATACCACGAATACATTGTTTGCGTATgcgatactctccaaaatggtgctataAAAAGGAGCAAAAGattaattgttgaataaaggggTTTTTTGTGTGCGTATAAAGTATTCTTACGGTTGTCATACCACTGATGTCATATGGATTAATTGAACAAGGttcttactacctttctggaccttgatgTTAGGATCAATGTTGTCTGTGGAAGGGGTCAGAAAGCCCTCGGAAATCATCAGAAGTGTTTTAATTCGTGTTCCAAAAATGAATGCTGGTCCTCGAGCTTAGCaacgacatgaggatgagtaattaacgacagtgttttcctttttgggtgaagtattcctttaaatacCTTGTTTGTTAGAATCTAACTTTGCGGTTTGTAATGAATTGCAACATTGCTGTGTATTGTGGAAATTTAAATGCACttgcttattttaatatttaatattttcatggcCAAATTCCACTCTTAAAAAaattcatgaataaaataaattatttctctaa

Function

GO:

id name namespace
GO:0000710 meiotic mismatch repair biological_process
GO:0000712 resolution of meiotic recombination intermediates biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006296 nucleotide-excision repair, DNA incision, 5'-to lesion biological_process
GO:0000110 nucleotide-excision repair factor 1 complex cellular_component
GO:0000014 single-stranded DNA endodeoxyribonuclease activity molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
K10848 ERCC4, XPF; DNA excision repair protein ERCC-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128087 lncRNA downstream 34833 8290080 ~ 8290410 (-) True G86576
TU128056 lncRNA downstream 126119 8198918 ~ 8199124 (-) True G86553
TU127998 lncRNA downstream 134958 8187641 ~ 8190285 (-) True G86505
TU127996 lncRNA downstream 136326 8187641 ~ 8188917 (-) False G86505
TU128010 lncRNA downstream 171070 8148747 ~ 8154173 (-) True G86513
TU128132 lncRNA upstream 2868 8334407 ~ 8338700 (-) False cpped1
TU128137 lncRNA upstream 7917 8339456 ~ 8339815 (-) True G86606
TU128139 lncRNA upstream 12797 8344336 ~ 8344609 (-) True G86608
TU128374 lncRNA upstream 180096 8511635 ~ 8513245 (-) True LOC122355061
TU128385 lncRNA upstream 204434 8535973 ~ 8538206 (-) True G86775
XM_043253545.1 mRNA downstream 202 8303767 ~ 8325041 (-) True mrtfba
XM_043253546.1 mRNA downstream 6148 8303767 ~ 8319095 (-) False mrtfba
XM_043253549.1 mRNA downstream 47078 8267774 ~ 8278165 (-) True mgrn1a
XM_043253548.1 mRNA downstream 47079 8267774 ~ 8278164 (-) False mgrn1a
XM_043253226.1 mRNA downstream 58615 8263110 ~ 8266628 (-) True foxj1b
XM_043253551.1 mRNA upstream 2865 8334404 ~ 8359992 (-) False cpped1
XM_043253550.1 mRNA upstream 2865 8334404 ~ 8359992 (-) True cpped1
XM_043253993.1 mRNA upstream 85693 8417232 ~ 8511214 (-) False snx29
XM_043253992.1 mRNA upstream 85693 8417232 ~ 8511213 (-) True snx29
XM_043253994.1 mRNA upstream 85693 8417232 ~ 8511212 (-) False snx29
TU127575 other downstream 936333 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 1221025 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1653996 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 2251811 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 2270890 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 16623 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 186696 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 187441 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 279013 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 351513 8683052 ~ 8687548 (-) False plbd1b

Expression Profile