RNA id: XM_043253548.1


Basic Information

Item Value
RNA id XM_043253548.1
length 2663
RNA type mRNA
GC content 0.47
exon number 16
gene id mgrn1a
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8267774 ~ 8278165 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAGTATCCTTTGCTCTCAGAACATCCCATCTCGCGAGAGAATGGGTTCCTCAGAAGCGAGTCTTTTCCAAtagtcttgtttttgtttttattttgtttgccgATTAAACGCCGTTTGTCTCGCGTCTACTCGCGAGTTTACTGATTTGATatagtgattttgtttttcagaagacCTAAACGTAGATACAAAAGTTAATTTCTTTTGTTCGCAGTTCTTTTTTCGTCGCCAGAGATGGGAACGTATCCATAGGGGAGGAAACAAACCGTATCCAGCTAACTGTCCAAACAAATCTTCCTTTATCCACATATATCGGTCTTCAGCGGTCATTTACACTCAAACATGGGTTCGATACTGAGCAGGAGGATTGCTGGAGTTGAAGATATCGATATTCAAGCCAATTCGGCGTACAGATATCCCCCCAAATCAGGAAATTATTTCACCAGCCATTTTTTCATGGGAGGAGAAAAGTTTGACACCCCCCATCCAGAGGGGTATCTTTTTGGAGAAAATATGGATTTGAATTTCCTAGGCAACAGACCTGTGCAGTTTCCATATGTGACACCAGCACCGCATGAGCCTGTGAAAACACTGAGGAGTTTGGTGAACATCAGGAAGGATTCTTTACGACTTGTCAGgtataaGGATGATTCTGACAGCACACCAGAGGATACAGGAGATCCCAGGGTTCTCTACAGTGTCGAATTCTGCTTTGATACCGATGCCAGAGTGGCTATTACATTGTACTGTCAGGCCTTTGAGGAGTTTGCCAATGGGATGGCAATatacAGCCCCAAGAGCCCTTCAATGGTGTCTGAGACGGTCCATTATAAGAGAGGGATAAATCAGCAATTTTCTCTACCGTCCTTCAAGATTGATTTCACCAAATGGAAACCTGAAGAGcTGAACTTTGATCTGGACAAAGGCGTTTTCCCTTTGGTGGTCCAAGCAATAGTGGATGATGGAGATGACGTCACCGGGCATGCACATGTTCTCTTGGCAGCTTTCGAAAGGCATGTTGATGGCAGTTTCTCAGTGAAGCCtctgaaacaaaagcaaattGTGGACCGTGTGAGCTATCTGCTGCAAGAGATTTACGGCATTGAAAACCGGAACAATCAGGAGACAAAGTCCACTGAGGACGAGAACAGTGACAACAGCAGCGAGTGTGTGGTTTGTTTATCAGACCTGCGTGACACACTCATTCTCCCTTGCAGGCACCTGTGTCTGTGCAATGCCTGTGCTGACACACTGCGTTACCAAGCCAACAACTGCCCTATCTGCAGACTGCCATTCAGAGCCCTGCTCCAGATTCGAGCCGTGAGGAAGAAAACAGCCGCCACTCTTTCACCAGTTTCCTTCAGCCCAGTGCTGTCCCAGAGCTCTGAGCATACTGAGCACTCGAATGCCGACAACATCCCTCCTGGCTATGAGCCCATCTCACTGCTGGAAGCCCTGAATGGGGTGCAACCCGTGTCCCCTTCAATCCCATCAGCACCTCTCTATGAGGAGATCCAGTTTTCTGGGGAGATGGGGGATCCTCTTAACCTGACCGGGCGGCAGCAGAACGCAGACACCACAGCGATGAAAGGCAAAGGTAGCAAGTCACCGGATGGGTCTACACGTTCTCCCTCATCCCCAATAcaagaggaggaagatgaggagAGGATGTCGGAGCTCTCTGATGCCCAGCCTCAGTCTGTTCTGCCCTGTAGTATCAGTCCCACTGAGGCCACGGTAGAGGGTGTGCCCACCAAACCTGGATTCCCAAATTCAGGTTCAGAGAGCAGATCCCTGGGTGTGTCTGTGAGCGAAATCCTGCAGGACTGCCACAGTGAGCGCAGCAGCCTGAGCCGGACAGAAAGTGACCCCTCAGCAGATCTGGCCCTGCCTGGGTCGTCGGAGTCTATAGAAAGCCTGAAGAGTCAGAGCACCAGCAGCTCCAGTCAGCCCCTGCTCTGCCTCCCCAGCACCCTGCACATGGAAGATGAGCGGCTCCCTTCATAAACGCCCCCCTGCTGTGCCACTTTCATCAACCCGCCGTTTCCATTCCACTACGCTGTTCTTCGTGAATGCTCTCAATTAAGGCAATCAATTCCCGAGTGCCACAATCAAAGCTATGTATTGAAGAGTCCTAGACATTTCACTGTGTGATagaaacacaatacaaaaaaaaaagaaaagaaaaagatcatTTACAGGATGTCGTAGCATTTGCTGTGACTCCAGTTCTTTTAATGGATGCTCAGTCTCTGACGTATGCAGCTTCATGGTGATCTATgactttgtatttttgtttttgtttttaataacaagcaAATGAACACTAAGTGCATCAGGTTGCAGTATGATACAGATGAATAGTATAATCAGTTACCCAGTTGAAGTAGTCATCTACGTCTGTATcttgtatatttgttttgtgcCTTATAGTACTGTGTGGCTGTCCCTTCGTCCTCCCGTTGAAATATACAAAGTGGGAAGCTGTAGCACTTCTTGAAGCTTTAATGAGTAGTTTATAGAGGGATTTGCCATGATTTACAGTTACATATCTGATGCTTTTTAGTGGATTCACCGCTGCTTATCTATGTCAGGCACctttaaaaattatgtatatttgtatgtagtCAAATCGTTTTATCATAAAGTGTTGTGCACAAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128056 lncRNA downstream 68650 8198918 ~ 8199124 (-) True G86553
TU127998 lncRNA downstream 77489 8187641 ~ 8190285 (-) True G86505
TU127996 lncRNA downstream 78857 8187641 ~ 8188917 (-) False G86505
TU128010 lncRNA downstream 113601 8148747 ~ 8154173 (-) True G86513
TU128016 lncRNA downstream 155061 8111193 ~ 8112713 (-) True G86516
TU128087 lncRNA upstream 11916 8290080 ~ 8290410 (-) True G86576
TU128132 lncRNA upstream 56243 8334407 ~ 8338700 (-) False cpped1
TU128137 lncRNA upstream 61292 8339456 ~ 8339815 (-) True G86606
TU128139 lncRNA upstream 66172 8344336 ~ 8344609 (-) True G86608
TU128374 lncRNA upstream 233471 8511635 ~ 8513245 (-) True LOC122355061
XM_043253226.1 mRNA downstream 1146 8263110 ~ 8266628 (-) True foxj1b
XM_043253227.1 mRNA downstream 1406 8263110 ~ 8266368 (-) False foxj1b
XM_043254435.1 mRNA downstream 62054 8203574 ~ 8205720 (-) True zgc:163057
XM_043253164.1 mRNA downstream 72558 8194223 ~ 8195216 (-) True hbae5
XM_043253703.1 mRNA downstream 88667 8155233 ~ 8179107 (-) False arhgap17a
XM_043253545.1 mRNA upstream 25603 8303767 ~ 8325041 (-) True mrtfba
XM_043253546.1 mRNA upstream 25603 8303767 ~ 8319095 (-) False mrtfba
XM_043253547.1 mRNA upstream 47079 8325243 ~ 8331539 (-) True ercc4
XM_043253551.1 mRNA upstream 56240 8334404 ~ 8359992 (-) False cpped1
XM_043253550.1 mRNA upstream 56240 8334404 ~ 8359992 (-) True cpped1
TU127575 other downstream 878864 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 1163556 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1596527 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 2194342 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 2213421 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 69998 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 240071 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 240816 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 332388 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 404888 8683052 ~ 8687548 (-) False plbd1b

Expression Profile