RNA id: XM_043253554.1


Basic Information

Item Value
RNA id XM_043253554.1
length 5458
RNA type mRNA
GC content 0.46
exon number 8
gene id zeb1b
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11685789 ~ 11741961 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGTAGAAGGGAGGGAGGGGAGGTGTGGGGGCGAGAGGAGGTGACTCTCCAGCAGCATTTAGACACAGCGAAAGGATCATGGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCGAGGAGGACAAACGTGAGTAACTACAGTCATGTGCTGGAGGGCCAGTCAGACTCAGATGATGAAGATAAGCTTCACATCGTGGAGGAGGAAGGGAGTCTCCTGGACGGGGCCGACTGTGACAGCGTGGCCCCTGACGATGACCCTAATGGGACCGTTGACCCTGACGGCAGATGGGACGATGTGAAAGAGGAGTGCGTGTCGGATGAGGATGAGAGGAGCAGAGATGCTTTGGTTGAGGAGATGCTCCAGCAAGGAGACACGGCCGTCATCTTCCCGGAGGCACCAGAAGACGAACCGCGACAGGGCACACCAGAAACCAGCGGACATGATGAAAATGGCACGCCAGACTCATTTTCTCAGCTCCTCACCTGTCCCTACTGCTCTCGTGGCTACAAGCGTTACACCTCACTGAAAGAACACATTAAATACAGACACGAGAAGAGCGAGGACAACTTCAGCTGCTCTCTCTGCAGCTACACCTTTGCCTACCGAACACAGCTAGACAGACACATGACCGCACACAAAGCTGGCAGAGAACAGCGGCATGTTACTCAATCAGGTGGAGGAGGGAATCGAAAGTTTAAATGCACTGAATGTGGCAAAGCCTTCAAGTACAAACACCACCTGAAAGAACACCTGCGCATCCACAGTGGAGAAAAGCCTTATGAGTGCTCCAACTGCAAGAAACGTTTCTCTCATTCCGGTTCTTATAGTTCCCACATCAGCAGTAAGAAGTGCATCGGCCTCATCTCAGTAAACGGCCGGCCGCGACCTTCTCCCGCCACCGGAGCTGCCAAAACTCCGCAGTGCTCTTCCCCATCCCTGCCAACCTCTTCCCCCACGGCACGTGTCCAAGTCAGAGACAAACTGGACAATAGTAAACCCCTTCAGGAACAGCTTCCCTTGACACAGATCAAGTCTGAGCCACTGGACTATGAGTACAAGCCTGTGGTGGTGGCCCCATCTGCTAGAGGCGTAAATGGCATATTCCAAGGTGGGGCAGCAGCACCTCTTCAAGGTGCCGTACAGGCTGTTGTCCTCCCAACAGTAGGTCTGGTATCCCCAATCAGCATCAACCTCGGGGACTTACAGAATGTGCTAAAGGTGGCAGTGGACGGGAATGTTATTAGGCAAGTGCTGGAAAGCACGCAAGCTAAGGGGCAGCAAACAGGGACGGGAATCGTTGGAGCAGGAGGGGTGGGAATTGCCCAAGCACCCCAACAAGTCATACAGGCCATTAGTCTTCCCATCTTGGACCAGGATGGCAGTGCTAAGATCTTCATTAATTATAGTCTAGATCCTTCGCAGGCCCAAGCAGTTCTTCAAAGTCCAAAGAAGGAATCTTTGGGGTTGACCACAGAAGCCTGCAAGGCTCAGAAGCTGCCAGAAGACTTGACAGTCAAGACAAATAGGGACAAAACCACCATCACTGTGGATGAGAAGAGTATTTTACACAACAACACAACACTTAAGCACTGTGGTAAAGATGGACATAGGGTAAACGGGAAAAACCTTGAGGGGAATATAGATTTGGAGGACGGACTGTGTCCTGGTCAGCCTCCCCTGAAGAACCTTCTCTCCTTGCTCAAGGCATATTTTGCCTTAAACAACGAGCCCACCAAGGAGGAGCTGGCAAAGATATCAGAATCTGTTAGTCTTCCGGCAGAGGTGGTGAAGAAGTGGTTTGAGAAGATGCAGTTGGGACAGATCTCTGTAGATCCTTCCTCACCCCTGGCTGAGGATGAGCAGACCACTCCTGAAGATTTGGATGGGACTAGAGGTGCAACACCCCGAACAGAGCCAGATAATCAAATGAACTCAGAGGAGCAAGGAGAGAGGGAATGCTGTAGCCCAGTTGAGGCTGTAGCAGCTGGGGAGAATGGAATAGAGAGTGTCCCTGCATCACCTTCACCACTAAACCTATCCGCCGATGGTCCTGTCCCAGCCAGGACTCTTGAGGAAGGTGAGGGACCTCTCGATCTGTCGCTACCAAAATCTGCTGCTACAGCTGCTGTGGCTAGCGGTCATGTAAACACTGTTTACTCGGCTCAAGAGGAGCCACTGAATTTGACTTGCACAAAGAAGGAACTGCTCAGCAATGCAAGCACCAATGCTGCCATATATGCCAGCCAACCAAGTGCCAATCCCATAAACATCGTGACCACTCAACTGCCCACACTAGTGGCTATCACTGACCAGGGACAAGCGCAATGTCTTCGTGCACTTACCACCACTAAACAGACCATCCTGATCCCACAGCTGACTTACAGTTACACCACTACATCCTCCAGCCCAGCAGGGAACGATGCGCCACAGAAGAACGTTATACACGTCAATGGCATCAAGGAGGAGAAACAGGAggtggggtcagaggtcacctcAACATTGGAAGAACAGACAGACTCCGACTCAGGGCCGACGAGAAAGAAGATGAAAAGGACGGAGAGTGGGTTGTATGCCTGTGACCTGTGTGACAAAATCTTCCAGAAGAGCAGCTCATTGCTCCGCCATAAATACGAACACACAGGAAAGAGGCCTCATGAATGTGGAATCTGCAGCAAGGCCTTCAAACACAAGCACCACCTAATAGAGCACCTGCGCCTGCACTCCGGAGAAAAGCCGTACCAATGCGACAAGTGCGGTAAACGCTTTTCCCATTCTGGCTCTTACTCGCAACACATGAACCACCGATACTCCTACTGTAAGAAAGAGGCTCAAGGCCAAGGGCTAGGCCAGGGAGTCGAGGAAGAGGACAATCCTGGTGAGGAGCAGCCTCGGACGGGCAGCACAGCGACCTCGCCCCCCTCCCACCTGGACTCGGATGAGCGGGGGAGCAGTACCAGAGAGGATGagagtgaggaggatgaggagatGGGCTCGGGGAGCTTGGTGGATGAAGATGAGATACAGGTGGTCAAGATCGGAGATGAGGGAGATGAAGATGACCAGGGGGCAGATGAGGACCGGGAAGGGGAAGAAGAGAGCATGGAAGGGGCCGAACAAAAAGAAGATGGTGACGAGGAAGGTGAGAGTGAGGAAAATGACGGACAAATGCTGAAAGTTGTAGTGATGCAGGATGAATGTGAAGACGGAAACGGAGAGGACGAGCGAACGGCGGAGGAGGCCATGGACACAGGATCTCTAGAACACGTCAAGGGCATAACAGAAAAAGACAACCCGGCGGACGATGAGAAAAAGAtcgaaaatgaagaaaacacagCCACTATGAACGGAGATGTGAAGTGAAGCCACAACTGTGTTTTTATGGCCCTTATTCCTTACGACGTTGTTTTACAAAGTTACTAATTTGAAGGAACAAAAAAGACGGTTTCGCTCCACagatgtttctctctcttcctgagAAAGTGACTGCGTTAAGACGAGAATGAAGTGAGGAAGAGAGCGTGACTGCTCTTGCGCTGCATTTAAACCCACTACTGTGTATAAACCCCCAGGTGTGCCTGATAAATACGAAATAGTTACTTTTTCCACGTAAAGACGATTTTCAGTGTTTGAGTATGGTTTGTATAAATGCAAAGTTTAAcgaaaaaacgaaacaaacaaaaacaaaaaagaaaatgacgcATATACGGACTGAAAGCTATACACGTTTTGgctaataatgttttattactaaAACGCCTTGGGTCAATTTCTTTTATCAGTATTACTAATTTTTTGTCACTCTCGGTTTACCCTCAAAAGCTGTACAGTTGGGAGAGAGAGATTTCTATACGTTTTTATTGCCAATGAACAAAACTCAGTATTTTCTTGcatttgaaggaaaaaaaaaatatcctgtgCACTACCATATTCCCAGTTTACCTATGGAACACCTATGTGGGCCTTGTGTTGTTTAATGTCTACCTTCCAGTATTAGCGCCCCTAAGCCACGCTAGCGCTCGCTAGCGCAACATTTGTCTGTCGTCTCATTTCAAGAAGGACTGTGAGCCTTAAATGTCAAAAGATTGATGTGGTTACGGTGGGAGGGCTTTTAATGAATCCTAAACGAGCCAAGGCATCAAAACCTTAGTAATCCCAGACGGCTGGTTTGAGACGTAGTCTTCATCATGTTTCAGGTGATCGCCATCAGTCCCTTCCCCACCCATCATCCACCCttatgcaaaaacatgcatgttgGAAGTGCCATTGAACAGTGCCGTGCCGTTGCTGTGACGCCGTCGCTGAGCAGCACACTCGCGTGAGGCTCATGCTGTCTTTGATTTTGGTAGCAAAAGTTTTGGACCCCTGCACCTAAACcactagtcctagactaaaggACAAGActgcctcttttttttattttatttgatcaatccAGTAAGGACTACACTGCATCAAGAATTCAGGAAAGACGATCAATGagcaaaaaggagaaaaaagaagCTCTTTTTTCAGCCTTGAAGTATTTTCCCCTTGTTTGGTGCACTTGTTTCTCTTGTTATCTTTAGCTGCACGACACTTTTTCTTCAGGTAACAAATGTAGGCAGATATGATCAATGAAGAATTcacttttagtgttttttgtttcttttcggTCAGCCTTTCTACCTGTCagtattaatttttgtttgtaagttttctttgttgtttgtttcagtgaacattgtgtaatttgttttgttttgttttgtttttcagtaaaggcaGTATTACCCCTCCCATCCCTCACCACGtataactttacatttttagttttagagaccttttatatttatgtgtcttatttttgtattttctttatgGTTATTTATTACACAATGTAGTGTACAATACTGTAGTTtgtattaatacaataatatattttagtatgaaGAATAATTTCGAAgataaatgaaatcaaagctGGGGAAGGAACTCTAGCAtttcaaagtgttttaaaacagaaaaagtattattttcaaattttcaaaatgcattgtttgaaaaaaaaaagacaaaacaaaaacaccccTAAAGTATATGAGAACTGTTAGCTTTTACACGTCACTTTCATGTTATTGTCTCTTACCCCACTATACTTTGAAGCTACTGAAAACTAATTGTATGCTATACACGCATGAGTCCTTGCTGTTGTATCGAAAGATTGTCCTTCACCATGAAACTGTGCTGCCCTTTTAATGAAGCCAAAACATCATCaacgtgttgtttttttattattatttttggttgtGCCAATTTGTAACTCTCTTTGTCTACATCAAGACAACAAAGTCTTTTATATGTCCCTGTTTTAACCTTTTTAGTGATAGCTTTTTGTTTGatcgtttgttttattttgtttttttttaatgactccCCATCTCACAATAAAATACTTCAAGAATACAACA

Function

GO:

id name namespace
GO:2000145 regulation of cell motility biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007369 gastrulation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252227.1 lncRNA downstream 105430 11579221 ~ 11580359 (-) True LOC122355534
TU129509 lncRNA downstream 105436 11579188 ~ 11580353 (-) False LOC122355534
TU129367 lncRNA downstream 366868 11316383 ~ 11318921 (-) True G87414
TU129370 lncRNA downstream 369791 11312472 ~ 11315998 (-) True G87417
TU129458 lncRNA downstream 402203 11278324 ~ 11283586 (-) False G87484
TU129560 lncRNA upstream 11088 11753049 ~ 11790926 (-) True G87547
TU129564 lncRNA upstream 57044 11799005 ~ 11799343 (-) True G87551
TU129565 lncRNA upstream 57631 11799592 ~ 11800481 (-) True G87552
TU129616 lncRNA upstream 148973 11890934 ~ 11894512 (-) True G87593
TU129629 lncRNA upstream 195080 11937041 ~ 11937682 (-) True G87603
XM_043253148.1 mRNA downstream 51906 11630324 ~ 11633883 (-) True hexdc
XM_043254075.1 mRNA downstream 55901 11624098 ~ 11629888 (-) True kctd2
XM_043254035.1 mRNA downstream 64787 11612742 ~ 11621002 (-) True slc16a5a
XM_043254291.1 mRNA downstream 73495 11607730 ~ 11612294 (-) False tap2t
XM_043254290.1 mRNA downstream 73498 11607024 ~ 11612291 (-) False tap2t
XM_043253494.1 mRNA upstream 78580 11820541 ~ 11823268 (-) True chmp2a
XM_043254010.1 mRNA upstream 190462 11932423 ~ 11936456 (-) True psme3
XM_043253672.1 mRNA upstream 361917 12103878 ~ 12112775 (-) True dhx8
XM_043254114.1 mRNA upstream 706075 12448036 ~ 12472207 (-) False uts2r2
XM_043254112.1 mRNA upstream 712895 12454856 ~ 12472207 (-) False uts2r2
TU129464 other downstream 363186 11321423 ~ 11322603 (-) True G87489
TU129388 other downstream 639907 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 2196477 9484946 ~ 9489312 (-) False ormdl3
XR_006252199.1 other downstream 2196477 9484946 ~ 9489312 (-) False ormdl3
TU128627 other downstream 2196499 9481630 ~ 9489290 (-) False ormdl3
TU129586 other upstream 90918 11832879 ~ 11835612 (-) True G87569
TU129639 other upstream 207310 11949271 ~ 11951155 (-) False G87608
TU129915 other upstream 907422 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 928664 12670625 ~ 12675472 (-) False prr15lb
TU130001 other upstream 1009943 12751904 ~ 12752678 (-) True G87845

Expression Profile