RNA id: XM_043253563.1


Basic Information

Item Value
RNA id XM_043253563.1
length 3002
RNA type mRNA
GC content 0.41
exon number 5
gene id nptx2b
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7892785 ~ 7897664 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGAGAAGCGCGGCGTCAGGCGTTCAAGGGCAGGATTTCATACCCGCGGACGATGTTtagtttaagttcatttttgcTATTCAATTAGTATTCCTTTGGCACAAACATGATTGGACCTCTCCGCGCGCCTTTATTACGCAGCTCCAAAATGATCCATCTGCTCGCCGGACTCATATGCATCTACGCACCGACGTGTGTAAAAGTTGTCTACGGACAGAATGAAAAAGGCGAGCGCTTTCTGTGTACTGCGGTCCCCATTGACAAGGAGACAAGTTGCCCCGTGCAGTCCCTGCCTGTTCAAAGCGCATCGGTCCAGGAGGAGGAACTGAGGAACACCGTCATGCAACTTCGCGAGACCATTTTACAGCAGAAGGAGACGATAGTCAATCAGCTGGGAACGATTAAAGAGCTGACGTCTAAACTTTCACGGTGCGAGTCTGACTCCGAAACGTTTAAGAAAACGAATAAGGACACGATGGACGATGTGCCTAAAGATCCAAACGACACCATTGACGTTCTTGGAAAAACGATGCAGAGTCTAAAAGATCGACTGGAAAATTTAGAGcaacagcAAATGCGAGCCAATATCTCTGGTGCCTCGTTTCCTAATGAGCTGAGAAATCTACTGCAGCGTAGACTGGAGGACTTGGAAAATCAGCTGCTCAAGAAGGTCAATGAGCTTGAGGAGGAGAAGTCCCAGCTATATAATGAGACCGTCGCTCATCGGCAGCGCACTGACAGCACTCTCAACTCTCTCATGAACAGGATCTCTGAACTGGAGAAAGGAGGAGCTGGATTTAAATCACCAGAGAATTTCAAGATCTCCCTTCCTCTTCGCACAAATTACCTTTTCGGACAAGTAAAGAAAAGCCTGCCGGAAATGTACGCCTTCACCATCTGCATGTGGCTCAAGTCAGGTTCGAGCCCCGGCATTGGAACCCCGTTTTCCTATGGAGTCCCTGGACAGGCAAACGAGATCGTACTGATCGAATGGGGCCATAACCCTATAGAACTGCTCATCAATGACAAGGTGGCACAGCTTCCTCTATCACTGAGTGATGGGAGGTGGCACCATATCTGCATCACTTGGACAACCAGGGATGGGCTTTGGGAAGCCTACCAGGATGGCCAAAGATTGGGCTCAGGAGAAAATCTGGCCCCCTGGCACCCTATCAAGCAAGGAGGAGTCCTCATCCTGGGCCAAGAGCAGGCCTGTCGTTTATGGCCTCAACAGGATGTAGTAGGGGGGCGCTTTGATGCCACCCAGGCCTTTGTGGGGGAACTGAGCCACTTTAACATCTGGGATCGGGTCCTGCGCTCCACGGATATCATTGCCATGTCAAACTGCTCGTCCTACATGCCTGGGAACGTGGTGGCCTGGACCGACAGTAACATTGAGGTGTTCGGTGGAGCATCAAAGTGGCCGCTGGAGCTATGCGAAGATCGGCTATTCGACAATTAAAGGTGTTTGCGGATATTGGCGATtaactcaccctcaagccatatTAGATGTATATGGAAGTTCTTCTTTGAGCATACAATCAagtttttgtctgaaagaagaacgTTAGGATGGCttaaggatgagtaaataatagggtaaatgtcattttggggggtgaactatccctttaaatcctCGTTATTCTCAAAAAAGATCAATCGCAAATTAGCAAATAGTTATAGAAACATCAGtggtatatttaaatatgctcagatagattacaaaaaagcaggtaaatgtaacatttaagtTGATATATTTGTGGCTAAAGGAAATTTTGCCATTGCAAAACGTATTGTATCAAATGGTACTTCCATGGTACTCTGATAAATACTGTAATCACTGAATGATTATCATAAGTGTATTTGCATTATAATCCATGGTACATTACCATGTCACCACAAAACCACACGTGCGTATGCATATCCTGTTGGAGTACAGCTGCATTCACAGCATGTTGGAATTACCAGAATTATGAGATTTGTAAAAAAGTGCTCATGTCCTCGTAGAATTCATAACTGCAACTTGCAAGCTCCGATTTGTTTCACTTGTCATTTGGAAACACTATAAATGGCAGCAGCTTCAGAAGTAAAATGTAGTTAAACAGTTTTTCCTAAGTACctactgttcatttttttaataatgcaagaataatctgtaaatacaaataatttagcACAGAGTAAGCACTGAATAACTTTCTAATGCCCTACTGAATGAACTATAAGATTATCAATAAGGCATTCGCATTACCTTTTGTATTGTGGTTTTGTCTGTTGATTACTCAAAGTacacaaattaatttcagaGGACATGAACAGATCTAAGCAGGACATCCTGGGTTGTCATctagaaatgtttattacaacATTGCGTAAACTCGAAAACTCAAAAGTATTTAGATAAAAAAGGAGTGTACTTGAATGTGCATTGCTGCCCTTTGGTCTTAGAGAGCCTAATGTaacatgctaatatttcattacaaagcgatttttatttaagaataaGGTTATACATTACATAAGAGgaacatttttgtatgttatgTTGTAAGACATCACACGAATGAGTTTATAACATGGTTAAAGCACCAttaatctttctttttaaatctgtcAGAGATTGttataaatagatatttatttaactcttaTATTACTCTTTTTAGAGTCTAAAGCCCATCCTCTGTTTACACTGACTGAATTACCCATTGAAGATTATAAACGCTTTAACACTgtcagatattttgaagaactgtGTTATGTGAATTATGTTGCATGGTCTGTTTCTTgaaatatattatcatatttttataccctgtttttaaaaatgaagcatttttcaGATATgtagtgttgttttgtttgttatggaATGTCAGGATACCCTAATGTTgtttaaaagcctttttttgtttaccGTGCCAATAATTCAGGGATTGCTTGACACTGCTAACCTGTGATTgccaatgaaaaataaagttcGCTTAGAAGTCTT

Function

GO:

id name namespace
GO:0048168 regulation of neuronal synaptic plasticity biological_process
GO:0042752 regulation of circadian rhythm biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127863 lncRNA downstream 1564 7890303 ~ 7891221 (-) True G86413
TU127862 lncRNA downstream 4539 7887966 ~ 7888246 (-) True G86412
TU127809 lncRNA downstream 45953 7846481 ~ 7846832 (-) True G86375
TU127784 lncRNA downstream 184591 7707860 ~ 7708194 (-) True G86357
TU127783 lncRNA downstream 187302 7705221 ~ 7705483 (-) True G86356
TU127922 lncRNA upstream 157104 8054768 ~ 8055031 (-) True G86458
TU128016 lncRNA upstream 213529 8111193 ~ 8112713 (-) True G86516
TU128010 lncRNA upstream 251083 8148747 ~ 8154173 (-) True G86513
TU127996 lncRNA upstream 289977 8187641 ~ 8188917 (-) False G86505
TU127998 lncRNA upstream 289977 8187641 ~ 8190285 (-) True G86505
XM_043254381.1 mRNA downstream 6812 7868994 ~ 7885973 (-) False baiap2l1a
XM_043254380.1 mRNA downstream 6813 7868994 ~ 7885972 (-) False baiap2l1a
XM_043254379.1 mRNA downstream 6813 7868994 ~ 7885972 (-) False baiap2l1a
XM_043254378.1 mRNA downstream 6814 7868994 ~ 7885971 (-) True baiap2l1a
XM_043254095.1 mRNA downstream 24425 7853619 ~ 7868360 (-) True tecpr1a
XM_043253452.1 mRNA upstream 159263 8056927 ~ 8069060 (-) False tom1l2
XM_043253454.1 mRNA upstream 159263 8056927 ~ 8069059 (-) False tom1l2
XM_043253451.1 mRNA upstream 159263 8056927 ~ 8069059 (-) True tom1l2
XM_043253455.1 mRNA upstream 159263 8056927 ~ 8069058 (-) False tom1l2
XM_043253453.1 mRNA upstream 159263 8056927 ~ 8069058 (-) False tom1l2
TU127575 other downstream 503875 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 788567 7103880 ~ 7104218 (-) True G86108
TU127372 other downstream 1221538 6670319 ~ 6671247 (-) True G86049
XR_006252215.1 other downstream 1819353 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 1838432 6051723 ~ 6054353 (-) False LOC122355418
TU128131 other upstream 450498 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 620571 8518235 ~ 8518365 (-) True LOC122355888
XR_006252259.1 other upstream 621316 8518980 ~ 8519109 (-) True LOC122355887
TU128398 other upstream 712888 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 785388 8683052 ~ 8687548 (-) False plbd1b

Expression Profile