RNA id: XM_043253568.1


Basic Information

Item Value
RNA id XM_043253568.1
length 6693
RNA type mRNA
GC content 0.43
exon number 5
gene id znf646
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12737819 ~ 12746643 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAATCGATCAATATCAGGAGAAGGTCGGCGGCTTTAGGACCACGACGAAATTACCCAGTGAACGCAGAGATGTGAGCCTTCATGACTTCCTCACTCACCACCTGGGGAATGTCTACAAAATGatctgaatttctttttaaattaaaacgcATTCATGCCTCTGTTATTTTGCTCTTCTTGCTACGCTGTTTCTACGGACCACAAGGCATGatgtaAAGAAGAATAAAACCGGAGCTGACTAAAGGCATCATGATTTATGATTTCATCCAGTGTCTGCGCTTACATCATCTTCTCAATGACATTTTTCCAGTGGAATGGAACCGGCTGTATTCTCAGCTAATTTTTTGAATGTTGCCTTTACATCTCTTCAAACAAGCTGATTTGATTATAGCAAGGACAGGTTTGTCCCTCACAGTAATTCAAACTGGCTCTTGTTGACATTTCTTATGAATATACTATACCATTATAGCTATGCAAGAGCCAGGCCGGACCAAAGGCTTCTCGTGTAGACATTGTGGTGTAGTATGTGCAAGCATGCCTAGTCTTTTGGAGCATACGGATACTTTTCATCAGTCGGAAGAGGAACGGAAGTACAAATGTGATGAATGTGGACGAGGCTACAGGCATGCAGGCAGCTTGGCTAACCACAGAAAAACACACGAGGTTGGCTCTTTTCAGTGTCATATATGCTCTAGGAAGCTCTCCAATGCATTGGCTCTAAAAAGCCACCTGCGGATTCACACGTCTAGAAAGAAATATTCTTGCACAGAATGCGGAAAGGCTTTTCGCCTTGCAACTCAGCTGGCCACCCATCAAAAGGTCCATCGCAATAAAGAGCCTCAAATCAGGACAAAGGATTCTGCAAACAGTCTTATTGAAAGTGATTATAAAGATGATGAGTTGCTGCATCTAGAGGAGATGGATTTTGACATGATACCAGATTTGCAGCCAGACATGAAGCTGAATATTGCTCCAATGAGCAGCCTTAGTAATGGTGCCATgtcagaacacattttaaacaccAACACAGAAAGTGATATGGCAGCTGAGGATGATGCTGGAGACCGGCCATTCAAATGTGACTTGTGTGACAAGACGTACAGACATCATGGCAGTCTCATAAATCATAAGAAAACTCATCAAATGGGGTTATTTGAGTGTCCAATCTGTTTTAAACAGTTCAACAATCTTGCTGCACTTAATAGTCACCAGCGAATACACAGTAAAACTCGAGGTCGTCTCAGTGTGCAGAACTCTAAAGCTGCCCTCACAGAATGCAAGCAAGAACTTGCCCCTCATGTTATGCCACAGAATGGTGAtgctaatatacatttttgccaCCTATGTCAGGTTGCTTTTGCTAATGATGACGAGTTTCAAAATCACATTCTCTTGCATAACTCTTCCTCAGTGTCATTTGAGCTCCCTACTAACTTGTCAGAGGAGCACAATTTTTCTTACGATGATAGTGTTACTCATTCTCCAGAGTCTAATTCTTATCCCCCCACTAGTGACACTCCACCATTGCCCACGCTACTTGATAAAGCAATTGAATATTCCCAAGCAGATGAGCCATTGGAAAATGGTCATATTTATCTACCCCACTCTTTAGATGAAAATCCATTGACTCTACATGCTCAGGGACAGCCAATGGCCCTACCATCAGAAAACCTCAACCCTGATTGTTTAGCACAGGGTACTGATAACATCAAAGTAGAAGATGTTGACAGTTTTGATCGCAGATTCAAGTGCCACATCTGTGGCAAAAGCTACAGGCATGCAGGCAGTCTTATAAATCACAAACGGTCCCATCAAACTGGGATCTTTCAATGTTCCATCTGCCGCAAGAACTACCCACATTTGGCGGCTTTGCGAAGCCACCTTCGGATCCATAAGGGAAGGCCTGCATCTTTGCCTGCTAGTTCTGAGGGTGACTGGCTTTCCTCAGAGCCCTTGACACATGAGAACCAACAGAACTGTTTTCCATCACATGAAGGAGATGTAAGTGGAATTTTAGGCCTCTCTCAGGACATGGTAGTCTCTGTGCAGCATAACTCCGATGAGGAGCATGTGAATGAGATGAATGCTACTGAATTTCATGAGCAGTTTGACAGCTCCTTCTCAGATGAGCACCTACCTCAGGATGAACACCTCATGGAGAGGCACATGTGTGCTGACTGTGGTAAAACATTTACTGATATTGCAGGAATCAAGTCACACATTTGTCCCCTCCTGAATCAGCAGTATCAGACCATGATGAACGGCTCACCTGGTCACATGGACTTTCACAACACAAAGCATCAACATTTCTTAGAAGAGTCAGAGGAAGATGTTGGTTTTGAGGAACACAACGCTAGTGCAGCAGAGGCCTATTTCCGGCAGCAGACCATTAATGACAACATTCATGGTGAGATGAGTGACAGTGAAGCTAAAGCTGAATGtgaagaagatgaagatgatgaagaggaggatgatGGAGAGATGTATCAGTGCTCAGTGTGTGGGAATCACTACACTAGCATGCGTGCACTGCGAAGCCATCTCAGAGGTCATACTCAAACACATGGTGCACCTTCAGCATGTGGTTCATCATCTTCTCTAGAGGTCAAGAAAGATGAACCGAGTGAAAATCAGCAGGGTGACTGCAGTCTTATTATCTGCAGCACTTGTGGAGAGAGCTTTACAAAGAAACAAGACCTACAAACCCACCAGCTCTTGCATAGCAATATAGAAGGTAATCCACAAGAACAATTTGTAACCAACCACCAGAATGAGCTCAAACCAAAAGTGGAAATGGAAAGTATTATTTGTGGTAAATGTGGCATTAGCTGCAGTGATATTTATCACCTCAATAACCACAACTGCACAGGACAACGAGATGGACAAGTGGAGGATAAATGTGGAGAGAAACGGCTCATTAGAAGTACATTTCAACGGCATCTTTTGCAGGAGAATCTACATGATGGAGAGCGCCAGTACAAGTGTGACCAATGTGGTCGTTCGTACAGACATGCTGGATCATTACTCAATCATAAGAAGTCTCACAAAACTGGAGTGTTTCGCTGCTTTGTTTGCCAAAAGCGTTTTTATAATTTGCTGGCTCTCAAGAATCACCAGAGGACACACTTTGATGTTAAAAaGCATAGATGTGCAGAATGTGggaaagcattcaaaatctataAACAACTGTTGAACCACCAGAGGGTACATCAGGAAAACAAGGCTAAGATTGAAGAGCTCAACAAACAAATTCAGACACTCATGCAGATGAGTGGGAATGCCTCAGGGAGTGGAATGCAGGCACCTAATTCTAGCAGGAGGAGAATGAGTAGACGCCACAAGCAACGGCAGACCTCTAACAGTGATCAGTCTAGCCAAGAAAAAGAGGGCCAGGTGGGAGATCCCAGAGACCCTCGCCCTTTTGTCTGTGATCAGTGTGGACGAAGCTATCGTCATGCAGGAAGCCTGGTCAACCACAAAAACTCGCACAAGACAGGTGAATATTACTGTGCATTGTGCAACAACACCTACTCCAATCAGCTAGCAATGAAGAACCATTTGCGAATACACTTTGCCGTCAAAAGACACCGCTGCCAAGACTGTGGAAAGGCCTTCAGAGGGAACAAACAGTTACTCAACCACACTTGTTcgacaaataaaagaaatgcagcAGCAAGAGGAAAGGTCAGGAGCCACAAACGAGAAAAGGATATGACTTGCAAGCAGTGCCGTCTTGTATTTCCAGATACTGAGCTACTTGAAGGGCACACCTGTACTAAAGAGACTGCCCATAATTCGGTTCCCCCAGGAGATGTAGATGGTGACAACGATGGTGCAGACCTAGGAAAAGAAGAACGACCATTTAAGTGCAACATTTGTAGTCGCAGTTACCGTCACGCTGGTAGCTTGttaaaccataaaaacactcacaaaaCAGGCCATTTCACCTGCACCTTTTGTGCCAAGCCCTTTTCCAATCCCATGGCTTTACGAAACCACACACGCATTCACACgcaaaagaaaaagtatgtCTGTCCTACTTGCGGTAAAGCTTTCCGTCTCTCCAGTATCCTGTACAATCATCAAAAAATCCATGCACGGGGAGTAACTCATTACAGCTGCCAAACATGTGGCAAAAGCTTCCAGGGAAAGTCTGGGCTAAAGAGACATCGCTGTTACCGAAACGGCAATCCAAACTCTACTGTAAATCAAGATGGTGTGGACAAATGCTATACGTGTGATCAGTGCGGACGCTCTTATAGACATGCTGGTTCCCTTCTTAACCACAAGAAGACTCATTCTACTGACCTCCTCCACTGCACTCTCTGCTTGAAAACATTCACGGACCCTCTGGATTTACAGAGCCATTCTCAAATGGCTCGCCACTGCTGCCCAGACTGTGGGAAAACCTTCTGTGAGTTTGCACACTTGCAGAGCCACATGGAGGTGCATAGTAAGGGACTGCCCTATTACTGCAACATGTGTCAACAGAACTTTCCAAACTTGGCTAGTTTTCAGCAGCACCAGGAGCTCCATGGTGGCTTGCAGGGGCAGTCACACCATGAGCAAGGTATGCAGATACAGCAGGATTTAGCCTGGGACTCTGCAATAGACCAACAGATAGGAATTCAGAGCCTTCCTAAAATCGATTCAGCCTTCAGCAGAGTGCACGGATTCCCTGAGCCACAAGACCAGCAGGAAAGTAACGAGGGATATGGTAAGGAAGAGAAAAGTCATGTGTGTGAGCATTGTGGACGTACTTACCGCCACGCTGGTTCACTGCTCAACCACAAGAACAGCCACAAGACCGGCTCCTTCTTTTGCTCGGTCTGCCAAAAGGAGTTCACCAATCTCATGGCGCTGAAGAATCACAGGCGCATTCACACAGAACCCAAACGCTATCAGTGCCTGGAGTGTGGCAAGGCCTTCCGGGTCTCCACCCAGCTTATCTGCCACAGGCGCATCCACACCAAAGAGAAGCCTTTCTCCTGCCTCCTTTGCGACAAGCGTTTCTCTAGCAAGTCCAACCTCCGGCACCATCAGAAGATGCATCAGAATACCCAACAGACTTATGAGTCCTCCTTCAGCATGGAAGAGAATGAATTCATGGGACTGGGTGTGGACCCTTTCCTCTAAGGCCACGTTCCAGTCTTGCCGCTTCAAGGGaagatttcaaaacattattctATTACAAGACTCTTTTCTCCACCCAAGGCCCAATGCCAATAATCGTACGACATCAGGTTTTCTGATGTACTTGTCCAGATGGTGTCACACACTGATGCTAATCTTGGCAAGACTTGCCTCCTTTACTGTTGTGTTTTCAAATGTTGTTCTTTAATGGACACTTAAAACTGGCATTGATAAGATACTACCTCTGGTAGGGACAGTAATACTGTAGACATTTTAGAATAAGTGACAGTGCCTGTCAGAGaccattttaggttttattttatttcatttgttttgtgtcCCCACACAGTGCACAAATTGTTTGGTACTATGATAGGTCTCAGACTGCGAGCTTGGATGAGTATTTCTGTCCAGACTCCTACCTAGTGCTGCCTTCAAGAGCCTGACCGATTATTTGGCATAATCGGAGGGGGAACAAAACAagctgttatgtttttttttaaggtgttaTGGGAATAAAAGGATACATACTATCCTTctcattatatttgtattaagtgCTTCCATATTTTCAGGTTATTGTACTGCTCATGGTAGATGTGCTGTAATCATTGTCTCATTAAGACCAACATACTCTTGATGTTCCTGCAGTTTCATAATGGATGACACTGGTAAGGCTGTTAAACAGCAACCTTCACTAAGGCCTGTCTTGTAGAAAATCtcaaagatatttatttatttaaatagaactATTTATACCttacattaatatttgaaatgtaaacatatttctTGTCTTTAATACTGTTAAATGTGGTACACATTATGCATGGTATTAAATGTGTGATAAATGCTAGATTGGTCGATTATGTAGGTATTCTAGATAATGGTTGTAAACACTTAAGAAATACCTCTTTAAAAGCATTCACAACAGCGTATTTGAAAGAAcaacaaatatttcagttttcttagCGCATACTTTTCtagtaaatgttttatgaagTGGAAGTATGCTCAAGCATTTTGGAGCACAAAAAATTAATGGACCCAACACATCCATGATCGGTCGGGCTCTGTTAGGGCAGGAATTCACAGACTAATCTCTTTtcaacagttttttaaaatgctcagGTCTCGCAACTTACTAGACGTAAtgtaagaaaatacattttagcttGATGCTTCTTGCATCAAGGCTTCTGTGTCTGTCGTTGATGCCAGATTGAATTTCAATGTGCCATTTCATATCACCACCCTACTTGGATTAAATTATTTGTAAGATGGTTTCCTTTTAAGCCTATAGATCAGTGCTTACTGATTATTTAAGAGTAGAATTTGCAGACTTTCATGTATTAATGGCTTCATTGCATTTGAGAAAACTTAAACTGACAACTGAGACTCGCTGTAATCAGTTGcatatatcttaaatataaaatatttatttttgttcacatgatcaatgtttctctttctcaaGTAGGGACCTTAATAAGCAGATGTTTATTTGTAGGTGTTGATGCCCTCACTTTCTTGAACTGAATAAAACCAATATAGCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252231.1 lncRNA downstream 99083 12613150 ~ 12638736 (-) True LOC122355629
TU129849 lncRNA downstream 250424 12438750 ~ 12487395 (-) True G87746
TU129766 lncRNA downstream 390753 12344898 ~ 12347066 (-) True G87695
TU129706 lncRNA downstream 585082 12152240 ~ 12152737 (-) True G87660
TU129705 lncRNA downstream 586184 12151299 ~ 12151635 (-) True G87659
TU130017 lncRNA upstream 58053 12804696 ~ 12807646 (-) True G87860
TU130240 lncRNA upstream 619310 13365953 ~ 13368320 (-) True G88003
TU130253 lncRNA upstream 682763 13429406 ~ 13432195 (-) False LOC122355808
TU130263 lncRNA upstream 687251 13433894 ~ 13434125 (-) True G88019
TU130280 lncRNA upstream 711813 13458456 ~ 13459865 (-) True G88034
XM_043253216.1 mRNA downstream 20635 12714251 ~ 12717184 (-) True ccdc189
XM_043253607.1 mRNA downstream 29645 12701248 ~ 12708174 (-) False cbx1b
XM_043253604.1 mRNA downstream 29781 12701248 ~ 12708038 (-) False cbx1b
XM_043253605.1 mRNA downstream 29968 12701248 ~ 12707851 (-) True cbx1b
XM_043253089.1 mRNA downstream 48571 12685112 ~ 12689248 (-) True si:ch211-194k22.8
XM_043253085.1 mRNA upstream 6076 12752719 ~ 12758921 (-) True cd37
XM_043254067.1 mRNA upstream 99871 12846514 ~ 12855295 (-) True si:ch211-214e3.5
XM_043254153.1 mRNA upstream 132957 12879600 ~ 12886164 (-) True sh2d4bb
XM_043253152.1 mRNA upstream 154292 12900935 ~ 13019703 (-) True nrg3b
XM_043253691.1 mRNA upstream 367167 13113810 ~ 13197085 (-) True atrnl1b
TU129915 other downstream 62347 12649383 ~ 12675472 (-) False prr15lb
TU129914 other downstream 62347 12670625 ~ 12675472 (-) False prr15lb
TU129639 other downstream 786664 11949271 ~ 11951155 (-) False G87608
TU129586 other downstream 902207 11832879 ~ 11835612 (-) True G87569
TU129464 other downstream 1415216 11321423 ~ 11322603 (-) True G87489
TU130001 other upstream 5261 12751904 ~ 12752678 (-) True G87845
XR_006252221.1 other upstream 865091 13611734 ~ 13691339 (-) False tcf7l2
XR_006252219.1 other upstream 865091 13611734 ~ 13691338 (-) False tcf7l2
XR_006252218.1 other upstream 865093 13611736 ~ 13691338 (-) False tcf7l2
XR_006252220.1 other upstream 867504 13614147 ~ 13691338 (-) False tcf7l2

Expression Profile