RNA id: XM_043253643.1


Basic Information

Item Value
RNA id XM_043253643.1
length 1616
RNA type mRNA
GC content 0.52
exon number 15
gene id mapta
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 407356 ~ 434276 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTGTTTACATTGAGCTTGTGACGGCCCTGCGTGAAGAGACAGATCCTGCCGATTGGATATTGATTCAACCCGTGCTTGTCCTTCGAATAGTTGATGGACACCTCTACTGTTGACTCACCGGAGTCATATGTACCCTCATTTGGACTTGCTATGGACCAGCAGCACGATTTATTGAGCTCCTCGCCCAATAGCCACACAGCTCACTACAACTCTGGCGATACCATGGCAACCTCCCTTTCTGGAATGACCATCAACGAtcatcaccatggcaaccagTTCCATAAGGAGAATGGAATTGCGGTGGGGCTCGTGAGACCAGGCGACTGTCCAATGAAAGAGGGGTTTTCAGAAGAACAGGTGGATGATGAGCACAGTAATGCTCCCGAGGAGAAGCAATGTGAGAGCCCCCAAGATTCAAGACGGGAAGAGAAAGAAGATCAGTGGCAGTCTATAGGGGAAACGGTGATTGCTGGAGGAACAGCGTCTGCAGCTCAGTCCAAGACCAATGGTGATGCTGAAAAGAGGGCTCCTAGTAGCAGTAGACCTCATGCTGCCGGTACAAAGATTCCTGCCATGACTGCGGCTGCCAAAAATGGAAAAGACTCTCCTAAGACCCCGGAGACCAGCGGGCACAGCAGCCCCGGGACTCCCAAATCCCCTGCCAGTAAGGCTGCGGGTGGCAAGCCTCCAAGCACAGGAAATGAAATCAAGAAGGTCGCAGTGATTCGCTCGACCCCTAAATCTCCGAAGAACCGCTCACCCACATCACTGTCAGCCGCTACCCCCCTCCCTGACCTGAAGAACATACGATCCAAAGTCGGCTCCACTGACAACTTAAAGCACCAGCCTGGAGGTGGCCGGATACAAATTCTTGACCAGAAGGTGGATTTCAGTAATGTTCAGTCCAAGTGTGGCTCCAAAGCCAACCTCAGGCATGTGCCAGGAGGTGGAAATGTAACAATTCTCGATCAGAAGGTGGACTTCACTAATGTCCAGTCAAAGTGTGGCTCCAAAGGCAATTTGAAACATGTACCGGGAGGTGGCAATGTTCAAATTCTCGATCAGAAGTTGGACTTAAGTAGCGTGCAGTCTAGGTGTGGTTCCAAAGATAATATGAAACATGTACCCGGAGGTGGAAAAGTCCAGATCCTCCACAAAAAGATTGATCTGAGCAATGTGCAATCCAAGTGTGGATCGAAAGACAACATTCGCCACAAACCAGGTGGAGGAAACATTGAGATCAGGTCTGAGAAGCTTGAATTCAAGGCTCAGTCAAAGGTCGGATCTATGGACAACATTAAACACGTACCTGGAGGAGGCAGCAGGAGGAAAGAGAAGGGGAAGGGGGCAGATACACCCCAAGACGAGGGCTTCCTGACCCCAGACCCCTCTGATACCCCCACCCTCTCATCTGCCAGTATGTCCCCAGAGCCCATCCTCCTCAGCAACCCCCAGATAAAGATTGAGGACTCCAATTGAGTCGCACAAGCTGCTGTTCCGTGAGCAGGCCAAAGCGCGAACCGACCATGGCGCAGAAATCGTGTCTCTAGAGGAGTCGCCACACGGCCTGAGCACCGTCTCCTCTTCTGGCAGCATCAACATGGCAGACCCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252217.1 lncRNA downstream 23294 385889 ~ 386457 (-) True LOC122355423
TU125268 lncRNA downstream 24729 382605 ~ 385022 (-) False LOC122355197
XR_006252187.1 lncRNA downstream 24731 382572 ~ 385020 (-) True LOC122355197
XR_006252193.1 lncRNA downstream 210884 197400 ~ 198867 (-) True LOC122355220
XR_006252194.1 lncRNA downstream 212358 196901 ~ 197393 (-) True LOC122355221
TU125292 lncRNA upstream 51392 478023 ~ 478431 (-) True G84547
TU125294 lncRNA upstream 60050 486681 ~ 486965 (-) False LOC122355759
TU125299 lncRNA upstream 70333 496964 ~ 498001 (-) False zgc:163073
TU125427 lncRNA upstream 116615 543246 ~ 552443 (-) True ifnphi4
TU125489 lncRNA upstream 183436 610067 ~ 611847 (-) True G84654
XM_043254214.1 mRNA downstream 28584 367950 ~ 381167 (-) False brsk1a
XM_043254217.1 mRNA downstream 28587 367950 ~ 381164 (-) False brsk1a
XM_043254209.1 mRNA downstream 28594 363606 ~ 381157 (-) True brsk1a
XM_043253221.1 mRNA upstream 13239 439870 ~ 444825 (-) False LOC122355175
XM_043253220.1 mRNA upstream 13239 439870 ~ 444825 (-) False LOC122355175
XM_043253222.1 mRNA upstream 13239 439870 ~ 444825 (-) True LOC122355175
XM_043254322.1 mRNA upstream 43212 469843 ~ 477539 (-) True LOC122355758
XM_043254323.1 mRNA upstream 57807 484438 ~ 490379 (-) True LOC122355759
XR_006252248.1 other downstream 49439 340273 ~ 360312 (-) False prr12a
XR_006252247.1 other downstream 49439 340273 ~ 360312 (-) False prr12a
XR_006252246.1 other downstream 49439 340273 ~ 360312 (-) False prr12a
TU125247 other downstream 88491 319330 ~ 321260 (-) True G84521
TU125173 other downstream 286984 115719 ~ 122767 (-) False G84485
TU125629 other upstream 464501 891132 ~ 897030 (-) False dlx4b
TU125823 other upstream 1444142 1870773 ~ 1947412 (-) False ank3b
unassigned_transcript_1807 other upstream 2067079 2493710 ~ 2493791 (-) True trnal-uag_3
TU126277 other upstream 2341277 2767908 ~ 2781353 (-) True G85232
TU126462 other upstream 2664154 3090785 ~ 3092413 (-) False LOC122355711

Expression Profile