RNA id: XM_043253672.1


Basic Information

Item Value
RNA id XM_043253672.1
length 4615
RNA type mRNA
GC content 0.46
exon number 23
gene id dhx8
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12103878 ~ 12112775 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCAACTTTCTTCCGGTAAAGGAAACAACAACGTTGCTGAGAAGATGGCAGAGATCGGGGAAGACGAGCTTAAAAAGCTCGAATATTTGTCTTTGGTGTCTAAAGTTTGTACTGAGCTTGACAACCATTTAGGAATCAACGATAAGGACCTTGctgaGTTTGTTATCAGTCTTGCTGAGAAAAACCCAACCATTGATGGATTTAAGTCAGTGCTGCATAAAAATGGAGCCGATTTCACAGATTCACTCGTCAGCAATTTGCTTCGTCTCATTCAAACCATGCGTCCTCCTGCAAAAGTATCTACCAGTAAAGcctCTCATGCTGTGGCTAAGCCAAAGAGTGAAAAGGACAAGCTGAAAGAGCTGTTTCCAGCTTTGTGCAGACCCGACAATCCTTGTACTAGGAATATGCTGGATGAGGATGATGTGAAAGTTGCTGCTGATGCCATGAAAGAGTTGGAGATGTTTATGCCCAGTGTTAGCGGTACAGAACCTAGCAGCAGTAAACACAGATCTGAAACCGGCAACAGCAGTAAAAAGAAGCGGAGGAGCAGAAGTCGgagcagagacagagatagagacagagatagagatagggacagggatagggatagggaaagagacagagacagacggaGACGCCATCGCTCTCGCTCCCGTTCCAGATCTCGATCTAATGAGCGAGACCGAAGGAAGCGCAGAAGCCGCTGGCACTCTCGCAGCAGGTCCAGGAGTCCTGCCCGTGGAGACAAAGACAAAGGTTCAGACCGCTGGAAGGACAAACATGTGGACCGGCCCCCTCCAGAGGAACCGTCCGTGGGGGATATCTACAATGGCAAAGTCACCAGTATTATGCAGTTTGGCTGCTTTGTACAGTTGGAAGGCCTCagGAAACGTTGGGAAGGCTTGGTCCATATTTCTGAGTTAAGGAGAGAGGGTCGAGTAGCAAATGTGGCAGATGTGGTCAGCAAAGGTCAAAGGGTCAAAGTCAAGGTGTTGTCCTTCACTGGATCCAAAACAAGTCTGAGTATGAAGGATGTTGACCAGgatactggtgaagacttgaaCCCTAACAGGAGGAGAAATGTGGGCGGAGAAGGTCAGGAAGAGTCCACAATGAGGAATCCTGATAGACCTACAAACCTGAACCTGGGGCACGCTCCAGAGGTAGAGGATGACACACTGGAACGCAAAAGACTCACCAAGATCTCTGATCCAGAGAAGTGGGAAATTAAACAGATGATTGCTGCCAATGTGTTGTCTAAAGAGGAATTCCCAGACTTTGATGAAGAGACGGGAATTTTGCCTAAAGTAGATGATGAAGAAGATGAGGACTTGGAGATTGAGCTGGTGGAAGAGGAACCTCCATTCCTCAGGGGACATACCAAACAGAGCATGGACATGAGTCCTGTCAAGATTGTCAAGAACCCAGATGGATCTCTCTCCCAAGCAGCCATGATGCAGAGCGCCCTGGCCAAAGAGCGACGGGAAGTGAAACAGGCCCAACGGGAGGCTGAAATGGACTCAATCCCAATGGGCCTTAACAAACATTGGGTGGACCCCCTTCCTGACGCCGACGGCAGGCAGATAGCTGCCAACATGAGGGGCATAGGTATGATGCCCAACGACATCCCAGAATGGAAGAAACACGCTTTTGGTGGCAACAAGGCCTCCTATGGGAAAAAGACTCAACTATCCATCCTAGAGCAAAGAGAGAGTCTTCCTATCTATAAGCTGAAAGAGCAGCTCATTCAGGCTGTCCATGACAACCAGATCCTAATTGTGATCGGTGAGACGGGCTCAGGaaagaccactcagatcactcaGTACCTAGCTGAGGCTGGATACACCACACGGGGGAAGATCGGGTGCACACAACCCAGAAGAGTGGCAGCCATGTCTGTGGCTAAAAGAGTGTCAGAGGAGTACGGTTGTTGTTTGGGTCAAGAGGTTGGCTACACCATCCGTTTTGAGGACTGCACAAGTCCTGAGACTGTCATCAAGTACATGACGGACGGTATGCTGTTAAGAGAGTGTCTTATTGACCCTGATTTGGGCCAGTATGCCATCATTATGTTGGATGAGGCCCACGAGAGAACCATTCACACAGATGTGCTCTTTGGCCTGCTCAAGAAGactGTACAGAAGCGAACTGACATGAAGCTCATCGTGACATCTGCTACGCTGGACGCTGTGAAATTCTCACAGTATTTTTATGAGGCACCTATTTTTACTATCCCTGGCCGTACATATCCAGTGGAGGTTTTGTACACTAAAGAACCTGAGACTGACTATCTGGATGCCAGTCTGATTACAGTAATGCAGATTCACCTCACTGAGCCGCCAGGTGACATCTTGGTGTTTCTGACGGGTCAAGAGGAGATTGACACTGCCTGCGAGATCCTATATGAACGAATGAAATCCCTCGGTCCTGATGTCCCAGAGCTGATCATCCTCCCAGTCTACTCTGCCCTGCCCAGTGAAATGCAGACCAGGATCTTTGACCCAGCACCACCTGGAAGTAGAAAGGTGGTCATTGCTACTAACATTGCAGAAACGTCTTTGACAATTGATGGGATCTACTATGTGGTGGATCCAGGTTTTGTCAAGCAGAAGGTTTATAACTCCAAAACCGGCATTGATCAGCTAGTTGTTACTCCCATCTCCCAGGCCCAGGCTAAGCAGCGAGCAGGCAGAGCTGGTAGAACAGGCCCTGGGAAGTGCTACAGACTCTACACAGAACGTGCCTACAGAGATGAGATGCTCACCACCAACGTACCTGAGATTCAAAGAACTAACTTGGCCAGCACTGTACTGTCTCTAAAGGCAATGGGCATCAATGACCTGTTGTCATTTGATTTCATGGATGCTCCGCCCATGGAAACTCTCATCACAGCCATGGAGCAACTGTACACTCTGGGAGCATTGGATGATGAAGGCTTGCTTACACGCCTCGGTCGCAGAATGGCTGAGTTTCCTTTGGAGCCCATGCTTTGTAAGATGTTGATTATGTCCGTCCATCTTGGCTGCAGTGAAGAGATGCTGACCATTGTGTCAATGCTCTCAGTACAGAATGTTTTCTACAGACCAAAGGACAAACAAGCTCTGGCAGACCAGAAGAAGGCTAAGTTTCACCAGCCCGAGGGGGACCACCTGACTTTGTTGGCTGTTTACAACTCCTGGAAGAACAACAAGTTTTCCAACCCCTGGTGCTATGAAAACTTCATCCAGGCGCGATCTCTCAGGCGTGCACAGGATATCCGCAAACAGATGCTGGGCATCATGGACAGacACAAATTGGACGTGGTATCATGCGGTAAAGCCACAGTACGTGTACAGAAGGCCATCTGCAGTGGTTTCTTCCGAAACGCAGCCAAAAAGGACCCTCAAGAAGGTTACAGGACCCTCATAGACCAGCAGGTGGTCTACATCCACCCCTCGAGCGCATTGTTCAATCGCCAACCAGAATGGGTGGTGTATCATGAGCTTGTGCTGACCACTAAGGAGTACATGAGGGAGGTGACCACCATCGACCCGAGGTGGCTTGTAGAATTTGCTCCAGCTTTCTTCAAAGTCTCTGATCCCACACGCCTCAGCAAACAGAAGAAACAGCAGCGGTTGGAGCCCCTTTACAACCGCTACGAGGAACCAAATGCTTGGAGAATATCCAGAGCCTTCAGGCGACGCTAGAACTTTCACACAAGGTCCTCAAAGACTGCGAATGTCCCATACTGCTGCTGAGCAAAAGGTTGAGTTTGTGGTGTTGGCAGAGTGGAGGATTACATGGACGGAGACTAAACATGtgtagaaaaaagaaaaaaacccaaggtgccctattttttttttttttaaaagataatatCCAGTATGTGAACAGCATGTTTGAATTTAATCGATGTTCCCTCAAAAATTAAAGCAGGTGTAATTTTCTGTTTAGTTTCCATGttaccatttaatttttttattgtcattttggaTATGGATGTCAGCAATTTGTATTTAAACTATCCCTAACTTTGTATTAAAGAAGCAAAAACCTAAGACATCAAAATATGAGATTATATTATCTCTGCTGTGAAGACCTGTATCAGATGCCAAATCcagttattttgattttttttttttttttcttaacaagcCATCCCTTTAACATAACAAATCAgttatttgcatttgtataGCACAACTCCTTTCCCAGATTCTCCGGAACAGCCCATGTGTTGTAGAATGTGTGGACAGCACATCCGTCTGGTCAGTAGATGTTGATCACTGTGCTGAGAGGGAAAGGGTTTTCATTAATTCAGTTAGTTCCTCTGTGGTGGTCTGGTCATGTATAATTGAACAGGATGTTAAGTCACTTTCACTATCATACACAGATCTCATCCTTATTTGGGACCTCtcttctgttttaatgtttaaattaccAACTCCGAACAGGATCAGTGCATTGGACCACAGTGAAGATTTTGTATTATAGCTCTTTTATTAGAGGAAGTGATGGGGGATGGAAATGTCCTAAAGTTTTTGATATTGTTACAGCTTATGTTCTGTCATATCTTTCAGTCATTTTGAtgtaaacttaaattaaaatttaaatcttacttttaaaaagta

Function

GO:

id name namespace
GO:0070054 mRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129650 lncRNA downstream 133054 11970529 ~ 11970824 (-) True G87610
TU129647 lncRNA downstream 152883 11948540 ~ 11950995 (-) True G87608
TU129640 lncRNA downstream 152883 11949271 ~ 11950995 (-) False G87608
TU129635 lncRNA downstream 156144 11946907 ~ 11947734 (-) True G87607
TU129631 lncRNA downstream 158247 11944072 ~ 11945631 (-) True G87605
TU129705 lncRNA upstream 38524 12151299 ~ 12151635 (-) True G87659
TU129706 lncRNA upstream 39465 12152240 ~ 12152737 (-) True G87660
TU129766 lncRNA upstream 232123 12344898 ~ 12347066 (-) True G87695
TU129849 lncRNA upstream 325975 12438750 ~ 12487395 (-) True G87746
XR_006252231.1 lncRNA upstream 500375 12613150 ~ 12638736 (-) True LOC122355629
XM_043254010.1 mRNA downstream 167422 11932423 ~ 11936456 (-) True psme3
XM_043253494.1 mRNA downstream 280610 11820541 ~ 11823268 (-) True chmp2a
XM_043253554.1 mRNA downstream 361917 11685789 ~ 11741961 (-) False zeb1b
XM_043254114.1 mRNA upstream 335261 12448036 ~ 12472207 (-) False uts2r2
XM_043254112.1 mRNA upstream 342081 12454856 ~ 12472207 (-) False uts2r2
XM_043254113.1 mRNA upstream 342081 12454856 ~ 12472207 (-) True uts2r2
XM_043254115.1 mRNA upstream 351419 12464194 ~ 12472207 (-) False uts2r2
XM_043254155.1 mRNA upstream 360114 12472889 ~ 12480834 (-) False psmd11b
TU129639 other downstream 152723 11949271 ~ 11951155 (-) False G87608
TU129586 other downstream 268266 11832879 ~ 11835612 (-) True G87569
TU129464 other downstream 781275 11321423 ~ 11322603 (-) True G87489
TU129388 other downstream 1057996 11042888 ~ 11045882 (-) True LOC122355648
XR_006252200.1 other downstream 2614566 9484946 ~ 9489312 (-) False ormdl3
TU129915 other upstream 536608 12649383 ~ 12675472 (-) False prr15lb
TU129914 other upstream 557850 12670625 ~ 12675472 (-) False prr15lb
TU130001 other upstream 639129 12751904 ~ 12752678 (-) True G87845
XR_006252221.1 other upstream 1498959 13611734 ~ 13691339 (-) False tcf7l2
XR_006252219.1 other upstream 1498959 13611734 ~ 13691338 (-) False tcf7l2

Expression Profile