RNA id: XM_043253674.1


Basic Information

Item Value
RNA id XM_043253674.1
length 3017
RNA type mRNA
GC content 0.51
exon number 16
gene id spata20
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12113257 ~ 12147867 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGAGTTTCGGGTCGCTCCACTGACAGTGCATTGCGTGAATCCTCACGTCGAGCAGCTCGGTGCGGATCTATGATGCTGAGACTGGGTCTCGCATGGTCTACATCGTCAACCTCCACCAAACACATCGCACAGGCCAGGCTCTTCACCGGATCCCTTCTGCGAAAACACAGTCCTCATACTTTATGTAACAGCCGGTGCTCTGGACTACCACAAGCCCTCCGGTTTGGCCAGAAGTCAGTGCTTGCCAGTACCAGATCGTCCTGGGACAGATTCAGGTCTTCGGGAACGGTTTTCTTCAGCATGGCATCTGGGAGCGATGGACCGGACACAATAAAGACCCCAAAACACACCAATCGCCTGAGTAAAGAGAAGTCTTCCTACCTATTACAACATGCACACAACCCTGTGGATTGGTATGCTTGGGGACAAGAAGCGTTTGACAAAGCGAAGAGCGAAGACAAGCCTATTTTTCTTTCAGTGGGTTATTCCACCTGTCACTGGTGTCATGTGATGGAGAGGGAATCGTTTGAAGATGAGGAGATTGGAAAAATCCTCAGTGAGAACTTTGTCTGTATAAAGGTGGACAGAGAGGAGAGGCCTGATGTGGACAAAGTTTACATGACATTTGTGCAGgcaACAAGTGGTGGTGGTGGCTGGCCAATGAGTGTTTGGCTCACTCCAGATCTCAGGCCTTTCATAGGTGGCACTTACTTCCCACCCAGAGACAGTGGAAGAAGACCTGGACTGAAAACTGTGCTTTTACGAATTATAGGACAATGGCAGAGCAACAGAGAAACCCTGGAGTCTAGTGGAGAGAGAGTACTGGAAGCCCTCAGGAAGGGGACAGAAATCTCTGCAAGCCCTGGAGAAACTCTTCCATCCGGCCCAGATGTTGCCAGCAGATGTTACCAGCAGCTGGCTCACTCATACGAAGAAGAATATGGAGGTTTTCGAGAGGCTCCGAAGTTCCCTTCACCAGtgAACCTGATGTTCCTGATGTCATTTTGGGCAGTAAATCGTGCCAGCTCTGAGGGAGCAGAAGCGCTGCAAATGACCCTTCACACTCTCCGGATGATGGCATTGGGGGGTATTCATGACCATGTGGCACAGGGCTTTCACAGATACTCCACAGACTCCTCCTGGCATGTTCCTCATTTTGAAAAGATGTTATATGACCAAGGCCAGCTTGCTGTAGCCTATATCACTGCTTATCAGGTGTCTGGGGAACGCCTGTTTGCAGATGTGGCTCGTGACGTGTTGCTTTATGTCTCCAGAGACCTAAGTGACAAGTCTGGCGGCTTCTATAGCGCTGAGGATGCAGATTCCTTTCCTACGGTGGAATCCACTGAGAAGAGAGAGGGAGCGTTTTGTGTGTGGACAGCAGGAGAGATCAGAGAGCTGCTTCCTGACATCGTGGAAGGCGCCGCAGGAGGTGCAACACAGGCGGATGTCTTCATGCATCATTATGGTGTGAAAGAACAAGGCAACGTGGACCCCACTCAGGACCCCCATGGAGAGCTGCAGGGTCAAAATGTGCTGATTGTGCGTTACTCAGTGGAACTCACCGCTGCTCACTTTGGCATCAGTTTGGACAAACTGTCCGAGCTGCTGTCCGATGCCAGGGCCAAGCTGGCCGAGGTGCGAAAAGCACGCCCACCTCCTCACCTGGACACCAAAATGCTAGCTTCTTGGAACGGGCTGATGTTGTCCGGGTTTGCACGTGTCGGAGCCGTGCTGGGCGACAAGGCTCTGCTGGAAAGAGCTGAGAGGGCAGCTTGTTTTCTCCAAGAACACCTGTGGGACGAAGCGGGCCAGAGGATTCTCCATTCCTGTTATCGTGGAAATAATATGGAGGTGGAGCAAGTTGCGTCTCCCATCGCAGGCTTCCTAGACGACTACGCTTTTGTGGTGTGTGGGCTGCTGGACCTGTTCGAGGCCACGCAAAGGGTCCGCTGGCTGCAGTGGGCCGAAGAACTCCAGCTGAAGCAGGATCAGCTCTTCTGGGATTCCCAGGGCAGCGGCTACTTCTGCAGTGACCCCTCGGATCCGACGCTGATGTTAGCTCTCAAACAGGaTCAGGATGGTGCCGAACCCAGTGCAAACTCTGTCTCAGCCATGAACTTGCTGCGTCTCTCACACCTCACAGGCCGGCAGGACTGGATACAGCGCTCGCAGCAATTACTGACTGCCTTCTCTGATAGACTGATTAAGGTTCCAATCGCCTTACCAGATATGGTCCGCAGTGTCATGGCCCAGCATTATACCCTCAAACAGATTGTTATCTGTGGCCAGCCTGATTCTCAGGACACTGCAAGTTTGATTTCCTGTGTCAACTCCCTCTTTCTGCCCCATAAAgtcCTGATGTTGGCAGATGGTAACACAGAGGGTTTCCTCTATCAGAGACTGCCCGTTCTCTCCAGCCTTGTTCCTCAGGACGGCAAAGCAACTGCGTACGCGTGTGAGAACTTCGCCTGTGCCCTCCCAGTCACCTGCCCGCAGGAATTGAGGAGACTGCTGCTGGAGTGAGAGCTGCCGTCACAGCACACAAACATCACTGTGGGATCTCTCCATAGTCGGACCGCTAGATATCTCAGATTATTACGCAAGTAGCAAAACTGCAGTCATCAAAAAACATTCGTAAATGAAATGCACTGGAAGACATTATACAGTGGCAAGGCAAACCTCTAGGGGTTGCCCTAGTTGTGATGTTCTGCCTCATTTTAGACCTATTATACAAGACGGTAGTCTTGGGAGATGGAAATACAATGACATCGTAATGTGAGGGGGAACGCTGAGATTAAACCTTTCATAGGTTTGCCTCATGGGCTCAGTTGATCTTCGTCAACCTGCTTTCTAAACAATCAAGCATGTTTCTCTGCAACCTTTCTATGCAGTGCAGCTGATCAGCCCTGTGTATGCAACATGCTGATGAACACGCTAGATTTAGAGTGGAATGACACATACGATGTATGTATAATAGACTCGGTGGAATATAATAAATACGCACTGAGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129663 lncRNA upstream 45628 12067403 ~ 12067629 (+) True G87621
TU129657 lncRNA upstream 115745 11997290 ~ 11997512 (+) True G87617
TU129284 lncRNA upstream 229840 11882685 ~ 11883417 (+) False hoxb6b
TU129264 lncRNA upstream 289935 11822063 ~ 11823322 (+) True G87337
TU129272 lncRNA upstream 309630 11803287 ~ 11803627 (+) True G87343
TU129688 lncRNA downstream 1556 12149423 ~ 12149637 (+) True G87644
XR_006252169.1 lncRNA downstream 3285 12151152 ~ 12156922 (+) True LOC122355133
XR_006252170.1 lncRNA downstream 3285 12151152 ~ 12156922 (+) False LOC122355133
TU129710 lncRNA downstream 9719 12157586 ~ 12157815 (+) True G87664
TU129711 lncRNA downstream 10379 12158246 ~ 12158508 (+) True G87665
XM_043253033.1 mRNA upstream 10554 12080097 ~ 12102703 (+) False etv4
XM_043253032.1 mRNA upstream 10554 12080099 ~ 12102703 (+) True etv4
XM_043253034.1 mRNA upstream 10554 12080407 ~ 12102703 (+) False etv4
XM_043253137.1 mRNA upstream 62254 12045523 ~ 12051003 (+) True meox1
XM_043253098.1 mRNA upstream 119629 11989281 ~ 11993628 (+) True sost
XM_043253658.1 mRNA downstream 17722 12165589 ~ 12352484 (+) False cacna1g
XM_043253657.1 mRNA downstream 17722 12165589 ~ 12352484 (+) True cacna1g
XM_043253663.1 mRNA downstream 17722 12165589 ~ 12352484 (+) False cacna1g
XM_043253665.1 mRNA downstream 17722 12165589 ~ 12352484 (+) False cacna1g
XM_043253666.1 mRNA downstream 17722 12165589 ~ 12352484 (+) False cacna1g
XR_006252241.1 other upstream 168402 11936842 ~ 11944855 (+) False nbr1a
TU129235 other upstream 411602 11694844 ~ 11701655 (+) True G87315
unassigned_transcript_1922 other upstream 1028887 11084277 ~ 11084370 (+) True trnai-uau_3
XR_006252209.1 other upstream 1531502 10542229 ~ 10581755 (+) False svila
TU129954 other downstream 584897 12732764 ~ 12737649 (+) True G87817
TU129966 other downstream 612507 12760374 ~ 12762273 (+) False gall
TU130259 other downstream 1294076 13441943 ~ 13444915 (+) True G88016
TU130341 other downstream 1447927 13595794 ~ 13596348 (+) True G88082
TU130395 other downstream 1715224 13863091 ~ 13863702 (+) False gucy2g

Expression Profile