RNA id: XM_043253678.1


Basic Information

Item Value
RNA id XM_043253678.1
length 2216
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC122355417
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6197482 ~ 6280348 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTATGTTTAGCTGAAGTTGGCGTGAGCGTCAAATATGGAATGTACTGTGGATCATTACACTGCAGGAATGCTGCTCAGCGGTGTAGGAGATGCTCTGGGTTACAGGAATCAACTGTGGGAATACAACCAATCTGGCCCTGCCATCCACCAGGAACTGCAAGAGCTAGGGGGGCTGAAAAACATCTCTGTGGAGCTTCCTGATTGGCCAGTTAGTGATGACACTGTGCTTCACTTGGCAACCGCTGAGGCCCTAGCAACAGGAAAAGCAGGCTTGGAGCTACTGCATGAGGTTGCTTTCCGATACGTGGAGGGAATGAAGGACATGGAAGGGAGGAAGCCAGGACCTTCAAGTATTCTAGGTATTGCACAGTTGCGCCCAGGCACTGAAGGGGGTTACAGGGTGCCGTATAACCCAGAAGCCACAGGTTGTGGGGCAGCCATGAGGTCCATGTGCATTGGCCTTAGATATCCTTATCCTGATCAGCTGTCCTCACTGGTTGAGGTTGCTGTGGAGACTGGAAGAATGACTCATCCTCATCCAACCGGTTTCCTTGGGGCTGTTGCTTCAGCCTTGTTCACCACTTATGCAGTCCAGCGAAGACCAATCACAACCTGGGGTCTGGGTTTATTGGAGGAAGCTTGTCCTgttgcaaaaacatttgttacgTCTGCAGGATATGCTGTTATGGAGACTGAGAGAGACTGGGACTACTTTACTGAAAAATGGAAATGGTATTTGGATCTAAGAGGACTATCTTTGGGGGCTGGGCCAGTTATTTGGCCTGACCAGTATGGGCCAGCAGAACGAGATGAGGCCTACAAGAGGTTCAGTCTGTCAGGTTGGGCTGGTCGAAGTGGTCATGATGCTCCAATGATAGCTCTGGATGCCCTCTTAGGAGCAGGCTTGAACTGGGAGGAACTCATGAGTCGAGCAGGATTTCATGGAGgctcccgatgGGAGTGGGCATGcctgagaggaggggcgtggtgttggacaggtctggcggcgtgtgacgaggcacacctgaagtgtatCGAGCCTCGTCACCGCCGTCGTTAAATACCGAGCACGCCTCTCCTCaaaagagaccggtctcccgaggactCCGTCCCTTACCACGACGATGACACCAGTTTCCccatttattttggacacttttcccctggacactttattttgtatattttgtttaattaaaagcctctccgaggcctaaCACCACGCCCACTATGTCTGCCGTTGGCTCCTCCAgccacactggtggagaatgcgggcaacgcggagcttagacggcacagttgagcaacatctgatgacgtcatcccctctTGCTCATACCCACGCCGGGACGGAGGAACGACGAAGTCTCGCTCCCAACCACCAGaaagggtaagtgacgcttgctttactgtcatttacccggtggctggttgagcttgtcgactaattcccggtttctctgtcccggtgcgagaggggagttgcccggagaggaatccctgccccgcccacttcgaccgctggagcctggttgaggaaggtagcactcctgcgtgggcaGTGACTGCTTGACGGGGTTGACGCTTGAGGAAGGGAATGTGAcaagtcggctgcccctcccctttattgtcatcatcacctcgtcctttattcgccgcccttcaccaggctcccgactgGAGTGGGCATgtccgagaggaggggcgtggtattggacaggtctggcggcgtgtgacatGGCATACCTGAAGTGTATTAAATTAGTAAAGTTAAATACCGAGCGTGCCTCTCCTTGAGAGACGGTCTCTTCCCCTGTGCAtacacgctggtgtcctcgtgggtccaggaagggagCGTGAAGGGACTGTCGGACTCCTTAGTCCAGGCGATGACCCCTGACGGGTCAGGATGccgggccaggatgccgggctgtttatcccttcaaaTCTGCCGACAGGAAAGAAGCGACAGAGAAGCCACGGGCAGAAGCCCTGGACCAGAGAGGGGAGTGCGTGCGGCCACcagactccgccccttacctggacccttccccctggagcaCTAActgacctgcacttcccctgcagGACAACAAGGACACCtgtttatttggacacttttccccctggacactttatttttgtatgtttttgttaataaacgcCACTGCCagtgtgtctgtcgttggctcctcccgccacaatatatatatata

Function

GO:

id name namespace
GO:0051725 protein de-ADP-ribosylation biological_process
GO:0003875 ADP-ribosylarginine hydrolase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127263 lncRNA downstream 117065 6097060 ~ 6097867 (-) True G85966
TU127230 lncRNA downstream 164282 6050200 ~ 6050650 (-) True G85939
TU127226 lncRNA downstream 181163 6033481 ~ 6033769 (-) True G85935
TU127225 lncRNA downstream 184908 6029733 ~ 6030024 (-) True G85934
TU127211 lncRNA downstream 202821 6007200 ~ 6012111 (-) False G85930
TU127332 lncRNA upstream 158552 6438900 ~ 6439334 (-) True G86017
TU127335 lncRNA upstream 160469 6440817 ~ 6441521 (-) True G86020
TU127339 lncRNA upstream 162470 6442818 ~ 6443073 (-) True G86024
TU127341 lncRNA upstream 162980 6443328 ~ 6443697 (-) True G86026
TU127345 lncRNA upstream 241478 6521826 ~ 6522579 (-) True G86030
XM_043253681.1 mRNA downstream 136864 6051168 ~ 6078068 (-) True LOC122355418
XM_043253059.1 mRNA downstream 192776 6017991 ~ 6022156 (-) True neurod2
XM_043253168.1 mRNA downstream 336711 5875085 ~ 5878221 (-) True mylpfb
XM_043254385.1 mRNA downstream 452321 5748277 ~ 5762611 (-) True pkmyt1
XM_043253937.1 mRNA upstream 891048 7171396 ~ 7173368 (-) True hexim1
XM_043253936.1 mRNA upstream 894270 7174618 ~ 7182834 (-) False acbd4
XM_043253935.1 mRNA upstream 894270 7174618 ~ 7182834 (-) False acbd4
XM_043253933.1 mRNA upstream 894270 7174618 ~ 7182834 (-) False acbd4
XM_043253934.1 mRNA upstream 894270 7174618 ~ 7182834 (-) True acbd4
XR_006252215.1 other downstream 141500 6064298 ~ 6073432 (-) False LOC122355418
XR_006252216.1 other downstream 160579 6051723 ~ 6054353 (-) False LOC122355418
TU127212 other downstream 207825 5990913 ~ 6007107 (-) True G85930
TU127203 other downstream 227152 5984989 ~ 5987780 (-) True G85925
TU127053 other downstream 788805 5423084 ~ 5426127 (-) True lsm5
TU127372 other upstream 389971 6670319 ~ 6671247 (-) True G86049
TU127438 other upstream 823532 7103880 ~ 7104218 (-) True G86108
TU127575 other upstream 1107888 7388236 ~ 7388910 (-) True G86203
TU128131 other upstream 2067814 8348162 ~ 8359980 (-) False cpped1
XR_006252260.1 other upstream 2237887 8518235 ~ 8518365 (-) True LOC122355888

Expression Profile