RNA id: XR_006252216.1


Basic Information

Item Value
RNA id XR_006252216.1
length 571
RNA type transcript
GC content 0.41
exon number 2
gene id LOC122355418
representative False

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6051168 ~ 6078068 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taataaatgtacatgccCTGTcatgtgaaaatgtaaacaggTTTGCAAAAAAGTCAATTGCAAATAAAGAGAAGTAATGGGAATGTGGTGTTTCtatgttctgtttttatgtGAGCAATAGACATTAAtaagttctttaaaaaacataaatgaccACGGAAACATAGCCAGTCATGCTCTACATTAAACTATGATTcactgtctgtcagtcactacaagttatgttgtgacgacaaactggggtcttgcttggaactcttattagctctgattaagagaaaagtggttaactaatcctgaggcACTCCCCATCACACGGGTATAAATAGAAGACAGGTGTAACCACTTGTCAAATTTTGCTTCGGAGTGCTGCATGTTGACTGTACTGGCAATTTCTTTTGAAGAGAGCGCTGGAAAAGAAGCTGTTCTTGTGGTGTTCATCGGCTTGGGCAGAAAAGGCAACACGTCTTCGTTCGGTTGTGTCTGATGTGCTGCCAGTTGATGTACACCAGTCCTTTCCATTATCACCAGAGTTCTTGCCCCCTTCTGGAGCAGACTGTCTGGTGTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127230 lncRNA downstream 1073 6050200 ~ 6050650 (-) True G85939
TU127226 lncRNA downstream 17954 6033481 ~ 6033769 (-) True G85935
TU127225 lncRNA downstream 21699 6029733 ~ 6030024 (-) True G85934
TU127211 lncRNA downstream 39612 6007200 ~ 6012111 (-) False G85930
TU127207 lncRNA downstream 63384 5987861 ~ 5988339 (-) True G85929
TU127263 lncRNA upstream 42707 6097060 ~ 6097867 (-) True G85966
TU127332 lncRNA upstream 384547 6438900 ~ 6439334 (-) True G86017
TU127335 lncRNA upstream 386464 6440817 ~ 6441521 (-) True G86020
TU127339 lncRNA upstream 388465 6442818 ~ 6443073 (-) True G86024
TU127341 lncRNA upstream 388975 6443328 ~ 6443697 (-) True G86026
XM_043253059.1 mRNA downstream 29567 6017991 ~ 6022156 (-) True neurod2
XM_043253168.1 mRNA downstream 173502 5875085 ~ 5878221 (-) True mylpfb
XM_043254385.1 mRNA downstream 289112 5748277 ~ 5762611 (-) True pkmyt1
XM_043254386.1 mRNA downstream 289120 5748277 ~ 5762603 (-) False pkmyt1
XM_043253671.1 mRNA downstream 305193 5736592 ~ 5746530 (-) True sult1st6
XM_043253679.1 mRNA upstream 143129 6197482 ~ 6280348 (-) False LOC122355417
XM_043253675.1 mRNA upstream 143129 6197482 ~ 6280348 (-) False LOC122355417
XM_043253676.1 mRNA upstream 143129 6197482 ~ 6272677 (-) False LOC122355417
XM_043253677.1 mRNA upstream 143129 6197482 ~ 6266681 (-) False LOC122355417
XM_043253678.1 mRNA upstream 160579 6214932 ~ 6280348 (-) True LOC122355417
TU127212 other downstream 44616 5990913 ~ 6007107 (-) True G85930
TU127203 other downstream 63943 5984989 ~ 5987780 (-) True G85925
TU127052 other downstream 625212 5423084 ~ 5426511 (-) False lsm5
TU127053 other downstream 625596 5423084 ~ 5426127 (-) True lsm5
TU127027 other downstream 654811 5322478 ~ 5396912 (-) True G85779
XR_006252215.1 other upstream 9945 6064298 ~ 6073432 (-) False LOC122355418
TU127372 other upstream 615966 6670319 ~ 6671247 (-) True G86049
TU127438 other upstream 1049527 7103880 ~ 7104218 (-) True G86108
TU127575 other upstream 1333883 7388236 ~ 7388910 (-) True G86203
TU128131 other upstream 2293809 8348162 ~ 8359980 (-) False cpped1

Expression Profile