RNA id: XM_043253682.1


Basic Information

Item Value
RNA id XM_043253682.1
length 3187
RNA type mRNA
GC content 0.42
exon number 18
gene id sh3bp1
representative True

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8591741 ~ 8600914 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGGTGTGTGCACAAAATGTGAAACAGTCAAGCCGAGACTCTTGCTGACACAAGTCCGAATGACATGCTTGTTTACTGACTTCAGAGAGcaacattttttatcaaatgaaacTAATATACTCTTGACCTTGCATGTACGAAACAAGGACTTAAAGGCGACAGATTCTTCACAATCATgctaaagcagtttaacatcTTAAAACAATTTGGAAATGGGGGGAAGTCGCAGGATGCAACTGATCTTCTCACAGAGGATCTTGTTTTGGTTGAACAGCGTGTGGAGCCAGCAAAGAAAGCTGCCCAGATCATCTACAAGAAGCTGGTAGGCTGCCTGCAGAGTCAGCAGGGACTGGACTCAGAGAGAAGGATGAAAAAGTTACCCCTCATGATGCTGTCTGTCAGTATGGCTGAGAGCTTTAAGGATTTTGATGGTGATTCCTCCATAAgAAAAGTTCTGGAAATGTGCTGCTTTATGCAAAATTTCCTGGCACGGACTCTGGCTGACTTTGAGATGAAGTTGGAAAAAGAAGTTCTTGTGCCTCTGAATAAGCTTAGTGAGGAGGACTTGCCAGAGATcttaaaaaacaagaaacagtTTGCTAAACTTACAacagactggagtaatgctcGAGTCAGATCTCAGGCCAGCACAGGCCCACAGGCCAAGCAAGACGGACTAAGAGAGGATGTAGAAGAGGCCTGGAGAAGACTGGAGTCTATAAAGgaTCAGTACTCTGCAGACCTCTATCATTTTGCCACTAAAGAAGATGAGTACGCCAGCTACTTCATCCGTCTTCTAGAGCTACAAGCTGAATATCACAAGGCTTCATATGAATTCCTGGAGAGAAACATAACAGAGCTCAAAGAGAGTCACAGCCACACAGAGCCCCAAGTGAGTTCATTAGAGAAAAAGGTTTTTGGAGAGCCTCTGCTGTCTCACCTCGAGAGCTGTGGAAGAAAAATCGCTGTCCCTATTGAGGAGTGTGTGAGCATGCTGATACGTACAGGACTCAAGGAAGAGGGTTTGTTCAGGCTAGCAGCTGCTGCATCTGTTGTAAAGAAACTGAAAAGCTGCCTGGATTCTGGTACTGTTGACCAAAATGAGTTCAGCTATGACCCACATGCTGTGGCAGGGGCTCTTAAGTGTTATTTGAGAGAGTTGCCTGAACCGCTCATGACGTTTGAGTTATATAATGACTGGTTCAAAGCTGCAGCaGAAAAGGAAACAGATGAAAAATTAAAGCAGTTGCGGACAGCGTTGCAAAAACTTCCTACAGAAAATTATAACAACCTCAGATACCTTGTCCAGTTCCTGTCACATCTGTCAGAGCAGCAAGCTGTGAACAAGATGACCCCTAGTAATATTGCCATAGTGCTCGGGCCTAATCTACTGTGGCCTCGCTGTGAGGAAGAGACGTCATTGCTGGACATGGCATCTGCCTCTTCGGTGCAAGTTGTGACAGTCATAGAGCCGCTTATACAGCATTCCAAGAGCCTCTTCCCCGAAGATGCTGATTTTGAGGTGCCAGAACCTCTCGAAAGCCCAGTCCCAAAAACATCCCAGAGACCTCTTTCTGACAGCATCTCACTCTCTCCCCCTTTCTCTTCTGGTCGACCATCCCTATCAAAAACTGACAGCTCAGCATCATCTGAGGACCTTGGGGTGACAGTCATTGTGAAATCTCAGGTGAACCGCGATGCTGTTGTGTGGGACAACATTGATTCTAATCCATCTGCTCAACCGCCTACACAGAATCAAATGCCTTCGTCACTTCCTCGTTACACTCCTGTACAAGCTCACAGCCAATCACAGGCTAAGACGCCATGCTCCATCCAATCAGAGCCAACTCAGGACCCGCCCTCCCAGGAGCCAACGCTGAAGATCACTGCTCCTTACAAACCAAGGAGGTCTTTCATCCAGCACAAGGCGCCAAACCTTCCCAAAGGCCCTCTTCTGAGCCAGGCAGGCTCTTTCCCAGCAGCCCAGACGAGAGCATTCCCTGTTCCTCTGCCGAGAGGCTCTGAAATGAAACCACCACCTCTACCCAAGCCCGAAACCACCCAAGCGCCATTGCCCACATTGCCTGAAGGGGGACAAAAGAAGCCCCAAGGCAGAAGACCTAAAGTTCCTCCTCCACAACCACCCCAAGCACTGAACAAGCAGCTCTCCACTCCAGCTCAGTGAGTTGACTGGGAAAAAGCACTGGTTTGTTTTGACATCTAATAGTTTATATCACTTCCTCGAGTGCAGTATCTTTTGGTTAAGCTTTTAAGCAGTGTTTTAATACACTagtgttcaaaagtttgaggtctgtaagatttttacaaatattaagtgtcttatgcttaccaagacTACATTAATTcgaacaaaatacagtaaaaacagtaatgttataaatagtattacaatttaaaatgacttttacatttttaatatgtctcaaaatgtaatttattcctggaATGACTTCTCAGCAGGCATTATttcggtcttcagtgtcaaatgataccacagaaatagttttaatatctgatttggtgctcaagaaacatttttattatgaattttgtgctgtttaatatttttttggtgatACATAGatcagaaaaacagcatttgtttttatttgttttactttacttttgatCAGATTAATGCATCCTGAATATGAAggattcatttctttaaaaattgtCCAAACCTCTGAACGAAAGTGTATGTCTGCTCTAGAGAATACGGGTTTGAGAACTGCTAAACACAATATAATCTGACTTCCTTTGGTTTTAGTTTGGGCGTACTGACACGCTTCACATtagctatttatatataagctTATTCTAAAGCATGACATTTGAAACGCCATGCTCACTCTTGTTAAAGCATTTTAAGGCTGATGTTGTTCATagcttattttaatgaaaacattgcaGGTAACATACATTGCTATTTTGCAACTTTCTTGTGCAAAGCCGCACATACGTACAGTATGTACATATTATATTGTGATTAAGGGAACGGAGAGGTCAACTCCTCTGTCAgaaacaaattcaaataaaattcatattaatatttaatcataattCCATAATACATTGATAAAAGCTGGTGGACATCatataatattactgtatacTGTGTTGATCTTAAGGTATTTATCATGtaataaagaaaagataaaTGACA

Function

GO: NA

KEGG:

id description
K20652 SH3BP1, ARHGAP43; SH3-domain binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128385 lncRNA downstream 53535 8535973 ~ 8538206 (-) True G86775
TU128374 lncRNA downstream 78496 8511635 ~ 8513245 (-) True LOC122355061
TU128139 lncRNA downstream 247132 8344336 ~ 8344609 (-) True G86608
TU128137 lncRNA downstream 251926 8339456 ~ 8339815 (-) True G86606
TU128132 lncRNA downstream 253041 8334407 ~ 8338700 (-) False cpped1
TU128428 lncRNA upstream 22383 8623297 ~ 8626329 (-) True G86807
TU128431 lncRNA upstream 26180 8627094 ~ 8630207 (-) True G86809
TU128455 lncRNA upstream 74732 8675646 ~ 8747077 (-) True G86825
TU128456 lncRNA upstream 74732 8675646 ~ 8747077 (-) False G86825
TU128458 lncRNA upstream 79191 8680105 ~ 8744645 (-) True G86826
XM_043253204.1 mRNA downstream 21667 8556275 ~ 8570074 (-) True tnrc6ba
XM_043253205.1 mRNA downstream 36090 8550384 ~ 8555651 (-) True csnk1e
XM_043253405.1 mRNA downstream 41908 8541219 ~ 8549833 (-) True tmem184ba
XM_043253403.1 mRNA downstream 41910 8541219 ~ 8549831 (-) False tmem184ba
XM_043253404.1 mRNA downstream 41912 8541219 ~ 8549829 (-) False tmem184ba
XM_043254384.1 mRNA upstream 1296 8602210 ~ 8606138 (-) True pdap1a
XM_043254453.1 mRNA upstream 5723 8606637 ~ 8611224 (-) True slc16a8
XM_043254454.1 mRNA upstream 10335 8611249 ~ 8612461 (-) True cby1
XM_043254241.1 mRNA upstream 33978 8634892 ~ 8636912 (-) True LOC122355698
XM_043254240.1 mRNA upstream 36497 8637411 ~ 8638883 (-) True LOC122355697
XR_006252259.1 other downstream 72632 8518980 ~ 8519109 (-) True LOC122355887
XR_006252260.1 other downstream 73376 8518235 ~ 8518365 (-) True LOC122355888
TU128131 other downstream 231761 8348162 ~ 8359980 (-) False cpped1
TU127575 other downstream 1202831 7388236 ~ 7388910 (-) True G86203
TU127438 other downstream 1487523 7103880 ~ 7104218 (-) True G86108
TU128398 other upstream 9638 8610552 ~ 8612445 (-) True G86783
XR_006252240.1 other upstream 82138 8683052 ~ 8687548 (-) False plbd1b
unassigned_transcript_1920 other upstream 86584 8687498 ~ 8687570 (-) True trnar-ccu_66
TU128530 other upstream 274703 8875617 ~ 8878112 (-) True LOC122355288
TU128628 other upstream 880645 9481559 ~ 9489290 (-) False ormdl3

Expression Profile